12#include <Teuchos_TimeMonitor.hpp>
13#include <PanzerAdaptersSTK_config.hpp>
14#include <stk_mesh/base/FEMHelpers.hpp>
34 PANZER_FUNC_TIME_MONITOR(
"panzer::CubeHexMeshFactory::buildMesh()");
40 mesh->initialize(parallelMach);
50 PANZER_FUNC_TIME_MONITOR(
"panzer::CubeHexMeshFactory::buildUncomittedMesh()");
54 machRank_ = stk::parallel_machine_rank(parallelMach);
55 machSize_ = stk::parallel_machine_size(parallelMach);
67 const int maxFactor = 50;
70 int factors[maxFactor];
71 for (
int jj = 0; jj < maxFactor; jj++) factors[jj] = 0;
72 for (
int jj = 2; jj < maxFactor; jj++) {
75 int temp = ProcTemp/jj;
76 if (temp*jj == ProcTemp) {
86 for (
int jj = maxFactor-1; jj > 0; jj--) {
87 while (factors[jj] != 0) {
103 "Cannot build CubeHexMeshFactory, the product of \"X Procs\", \"Y Procs\", and \"Z Procs\""
104 " must equal the number of processors.");
118 PANZER_FUNC_TIME_MONITOR(
"panzer::CubeHexMeshFactory::completeMeshConstruction()");
126 Teuchos::FancyOStream out(Teuchos::rcpFromRef(std::cout));
127 out.setOutputToRootOnly(0);
128 out.setShowProcRank(
true);
134 out <<
"CubeHexMesh: Building sub cells" << std::endl;
139 out <<
"CubeHexMesh: NOT building sub cells" << std::endl;
173 setMyParamList(paramList);
175 x0_ = paramList->get<
double>(
"X0");
176 y0_ = paramList->get<
double>(
"Y0");
177 z0_ = paramList->get<
double>(
"Z0");
179 xf_ = paramList->get<
double>(
"Xf");
180 yf_ = paramList->get<
double>(
"Yf");
181 zf_ = paramList->get<
double>(
"Zf");
183 xBlocks_ = paramList->get<
int>(
"X Blocks");
184 yBlocks_ = paramList->get<
int>(
"Y Blocks");
185 zBlocks_ = paramList->get<
int>(
"Z Blocks");
187 xProcs_ = paramList->get<
int>(
"X Procs");
188 yProcs_ = paramList->get<
int>(
"Y Procs");
189 zProcs_ = paramList->get<
int>(
"Z Procs");
191 nXElems_ = paramList->get<
int>(
"X Elements");
192 nYElems_ = paramList->get<
int>(
"Y Elements");
193 nZElems_ = paramList->get<
int>(
"Z Elements");
202 Teuchos::FancyOStream out(Teuchos::rcpFromRef(std::cout));
203 out.setOutputToRootOnly(0);
204 out.setShowProcRank(
true);
206 out <<
"CubeHexMesh: NOT creating edge blocks because building sub cells disabled" << std::endl;
210 Teuchos::FancyOStream out(Teuchos::rcpFromRef(std::cout));
211 out.setOutputToRootOnly(0);
212 out.setShowProcRank(
true);
214 out <<
"CubeHexMesh: NOT creating face blocks because building sub cells disabled" << std::endl;
225 static RCP<Teuchos::ParameterList> defaultParams;
228 if(defaultParams == Teuchos::null) {
229 defaultParams = rcp(
new Teuchos::ParameterList);
231 defaultParams->set<
double>(
"X0",0.0);
232 defaultParams->set<
double>(
"Y0",0.0);
233 defaultParams->set<
double>(
"Z0",0.0);
235 defaultParams->set<
double>(
"Xf",1.0);
236 defaultParams->set<
double>(
"Yf",1.0);
237 defaultParams->set<
double>(
"Zf",1.0);
239 defaultParams->set<
int>(
"X Blocks",1);
240 defaultParams->set<
int>(
"Y Blocks",1);
241 defaultParams->set<
int>(
"Z Blocks",1);
243 defaultParams->set<
int>(
"X Procs",-1);
244 defaultParams->set<
int>(
"Y Procs",1);
245 defaultParams->set<
int>(
"Z Procs",1);
247 defaultParams->set<
int>(
"X Elements",5);
248 defaultParams->set<
int>(
"Y Elements",5);
249 defaultParams->set<
int>(
"Z Elements",5);
251 defaultParams->set<
bool>(
"Build Interface Sidesets",
false);
253 defaultParams->set<
bool>(
"Build Subcells",
true);
256 defaultParams->set<
bool>(
"Create Edge Blocks",
false,
"Create edge blocks in the mesh");
257 defaultParams->set<
bool>(
"Create Face Blocks",
false,
"Create face blocks in the mesh");
259 Teuchos::ParameterList & bcs = defaultParams->sublist(
"Periodic BCs");
260 bcs.set<
int>(
"Count",0);
263 return defaultParams;
269 RCP<Teuchos::ParameterList> validParams = rcp(
new Teuchos::ParameterList(*
getValidParameters()));
285 typedef shards::Hexahedron<8> HexTopo;
286 const CellTopologyData * ctd = shards::getCellTopologyData<HexTopo>();
287 const CellTopologyData * side_ctd = shards::CellTopology(ctd).getBaseCellTopologyData(2,0);
288 const CellTopologyData * edge_ctd = shards::CellTopology(ctd).getBaseCellTopologyData(1,0);
289 const CellTopologyData * face_ctd = shards::CellTopology(ctd).getBaseCellTopologyData(2,0);
297 std::stringstream ebPostfix;
298 ebPostfix <<
"-" << bx <<
"_" << by <<
"_" << bz;
327 std::stringstream ss;
328 ss <<
"vertical_" << bx-1;
332 std::stringstream ss;
333 ss <<
"horizontal_" << by-1;
337 std::stringstream ss;
338 ss <<
"transverse_" << bz-1;
351 for(
int xBlock=0;xBlock<
xBlocks_;xBlock++) {
352 for(
int yBlock=0;yBlock<
yBlocks_;yBlock++) {
353 for(
int zBlock=0;zBlock<
zBlocks_;zBlock++) {
354 buildBlock(parallelMach,xBlock,yBlock,zBlock,mesh);
368 panzer::GlobalOrdinal myXElems_start = sizeAndStartX.first;
369 panzer::GlobalOrdinal myXElems_end = myXElems_start+sizeAndStartX.second;
370 panzer::GlobalOrdinal myYElems_start = sizeAndStartY.first;
371 panzer::GlobalOrdinal myYElems_end = myYElems_start+sizeAndStartY.second;
372 panzer::GlobalOrdinal myZElems_start = sizeAndStartZ.first;
373 panzer::GlobalOrdinal myZElems_end = myZElems_start+sizeAndStartZ.second;
379 double deltaX = (
xf_-
x0_)/
double(totalXElems);
380 double deltaY = (
yf_-
y0_)/
double(totalYElems);
381 double deltaZ = (
zf_-
z0_)/
double(totalZElems);
383 std::vector<double> coord(3,0.0);
386 for(panzer::GlobalOrdinal nx=myXElems_start;nx<myXElems_end+1;++nx) {
388 for(panzer::GlobalOrdinal ny=myYElems_start;ny<myYElems_end+1;++ny) {
390 for(panzer::GlobalOrdinal nz=myZElems_start;nz<myZElems_end+1;++nz) {
393 mesh.
addNode(nz*(totalYElems+1)*(totalXElems+1)+ny*(totalXElems+1)+nx+1,coord);
398 std::stringstream blockName;
399 blockName <<
"eblock-" << xBlock <<
"_" << yBlock <<
"_" << zBlock;
403 for(panzer::GlobalOrdinal nx=myXElems_start;nx<myXElems_end;++nx) {
404 for(panzer::GlobalOrdinal ny=myYElems_start;ny<myYElems_end;++ny) {
405 for(panzer::GlobalOrdinal nz=myZElems_start;nz<myZElems_end;++nz) {
406 stk::mesh::EntityId gid = totalXElems*totalYElems*nz+totalXElems*ny+nx+1;
407 std::vector<stk::mesh::EntityId> nodes(8);
408 nodes[0] = nx+1+ny*(totalXElems+1) +nz*(totalYElems+1)*(totalXElems+1);
409 nodes[1] = nodes[0]+1;
410 nodes[2] = nodes[1]+(totalXElems+1);
411 nodes[3] = nodes[2]-1;
412 nodes[4] = nodes[0]+(totalYElems+1)*(totalXElems+1);
413 nodes[5] = nodes[1]+(totalYElems+1)*(totalXElems+1);
414 nodes[6] = nodes[2]+(totalYElems+1)*(totalXElems+1);
415 nodes[7] = nodes[3]+(totalYElems+1)*(totalXElems+1);
427 panzer::GlobalOrdinal minElements =
nXElems_/size;
428 panzer::GlobalOrdinal extra =
nXElems_ - minElements*size;
430 TEUCHOS_ASSERT(minElements>0);
434 panzer::GlobalOrdinal nume=0, start=0;
435 if(panzer::GlobalOrdinal(xProcLoc)<extra) {
436 nume = minElements+1;
437 start = xProcLoc*(minElements+1);
441 start = extra*(minElements+1)+(xProcLoc-extra)*minElements;
444 return std::make_pair(start+
nXElems_*xBlock,nume);
453 panzer::GlobalOrdinal minElements =
nYElems_/size;
454 panzer::GlobalOrdinal extra =
nYElems_ - minElements*size;
456 TEUCHOS_ASSERT(minElements>0);
460 panzer::GlobalOrdinal nume=0, start=0;
461 if(panzer::GlobalOrdinal(yProcLoc)<extra) {
462 nume = minElements+1;
463 start = yProcLoc*(minElements+1);
467 start = extra*(minElements+1)+(yProcLoc-extra)*minElements;
470 return std::make_pair(start+
nYElems_*yBlock,nume);
478 panzer::GlobalOrdinal minElements =
nZElems_/size;
479 panzer::GlobalOrdinal extra =
nZElems_ - minElements*size;
481 TEUCHOS_ASSERT(minElements>0);
485 panzer::GlobalOrdinal nume=0, start=0;
486 if(zProcLoc<Teuchos::as<std::size_t>(extra)) {
487 nume = minElements+1;
488 start = zProcLoc*(minElements+1);
492 start = extra*(minElements+1)+(zProcLoc-extra)*minElements;
495 return std::make_pair(start+
nZElems_*zBlock,nume);
507 std::vector<stk::mesh::Entity> localElmts;
510 stk::mesh::EntityId offset[6];
512 offset[1] = offset[0] + totalXElems*totalZElems;
513 offset[2] = offset[1] + totalYElems*totalZElems;
514 offset[3] = offset[2] + totalXElems*totalZElems;
515 offset[4] = offset[3] + totalYElems*totalZElems;
516 offset[5] = offset[4] + totalXElems*totalYElems;
521 std::vector<stk::mesh::Entity>::const_iterator itr;
522 for(itr=localElmts.begin();itr!=localElmts.end();++itr) {
523 stk::mesh::Entity element = (*itr);
526 std::size_t nx,ny,nz;
527 nz = (gid-1) / (totalXElems*totalYElems);
528 gid = (gid-1)-nz*(totalXElems*totalYElems);
529 ny = gid / totalXElems;
530 nx = gid-ny*totalXElems;
532 std::vector<stk::mesh::Part*> parts;
536 mesh.
getBulkData()->declare_element_side(element, 4, parts);
538 if(nz+1==totalZElems) {
540 mesh.
getBulkData()->declare_element_side(element, 5, parts);
545 mesh.
getBulkData()->declare_element_side(element, 0, parts);
547 if(ny+1==totalYElems) {
549 mesh.
getBulkData()->declare_element_side(element, 2, parts);
554 mesh.
getBulkData()->declare_element_side(element, 3, parts);
556 if(nx+1==totalXElems) {
558 mesh.
getBulkData()->declare_element_side(element, 1, parts);
569 const stk::mesh::EntityRank side_rank = mesh.
getSideRank();
576 stk::mesh::Part * left = mesh.
getSideset(
"left");
577 stk::mesh::Part * right = mesh.
getSideset(
"right");
578 stk::mesh::Part * top = mesh.
getSideset(
"top");
579 stk::mesh::Part * bottom = mesh.
getSideset(
"bottom");
580 stk::mesh::Part * front = mesh.
getSideset(
"front");
581 stk::mesh::Part * back = mesh.
getSideset(
"back");
583 std::vector<stk::mesh::Part*> vertical;
584 std::vector<stk::mesh::Part*> horizontal;
585 std::vector<stk::mesh::Part*> transverse;
589 std::stringstream ss;
590 ss <<
"vertical_" << bx-1;
591 vertical.push_back(mesh.
getSideset(ss.str()));
594 std::stringstream ss;
595 ss <<
"horizontal_" << by-1;
596 horizontal.push_back(mesh.
getSideset(ss.str()));
599 std::stringstream ss;
600 ss <<
"transverse_" << bz-1;
601 transverse.push_back(mesh.
getSideset(ss.str()));
605 std::vector<stk::mesh::Entity> localElmts;
611 std::vector<stk::mesh::Entity>::const_iterator itr;
612 for(itr=localElmts.begin();itr!=localElmts.end();++itr) {
613 stk::mesh::Entity element = (*itr);
616 std::size_t nx,ny,nz;
617 nz = (gid-1) / (totalXElems*totalYElems);
618 gid = (gid-1)-nz*(totalXElems*totalYElems);
619 ny = gid / totalXElems;
620 nx = gid-ny*totalXElems;
642 if(nz+1==totalZElems) {
673 if(ny+1==totalYElems) {
704 if(nx+1==totalXElems) {
722 stk::mesh::Part * origin = mesh.
getNodeset(
"origin");
724 Teuchos::RCP<stk::mesh::BulkData> bulkData = mesh.
getBulkData();
728 stk::mesh::Entity node = bulkData->get_entity(mesh.
getNodeRank(),1);
737 Teuchos::RCP<stk::mesh::BulkData> bulkData = mesh.
getBulkData();
738 Teuchos::RCP<stk::mesh::MetaData> metaData = mesh.
getMetaData();
742 stk::mesh::Selector owned_block = metaData->locally_owned_part();
744 std::vector<stk::mesh::Entity> edges;
745 bulkData->get_entities(mesh.
getEdgeRank(), owned_block, edges);
753 Teuchos::RCP<stk::mesh::BulkData> bulkData = mesh.
getBulkData();
754 Teuchos::RCP<stk::mesh::MetaData> metaData = mesh.
getMetaData();
758 stk::mesh::Selector owned_block = metaData->locally_owned_part();
760 std::vector<stk::mesh::Entity> faces;
761 bulkData->get_entities(mesh.
getFaceRank(), owned_block, faces);
768 std::size_t i=0,j=0,k=0;
774 return Teuchos::tuple(i,j,k);
void buildElements(stk::ParallelMachine parallelMach, STK_Interface &mesh) const
virtual Teuchos::RCP< STK_Interface > buildUncommitedMesh(stk::ParallelMachine parallelMach) const
std::string edgeBlockName_
panzer::GlobalOrdinal nXElems_
std::pair< panzer::GlobalOrdinal, panzer::GlobalOrdinal > determineZElemSizeAndStart(int zBlock, unsigned int size, unsigned int rank) const
void buildMetaData(stk::ParallelMachine parallelMach, STK_Interface &mesh) const
Teuchos::Tuple< std::size_t, 3 > procRankToProcTuple(std::size_t procRank) const
what is the 3D tuple describe this processor distribution
std::pair< panzer::GlobalOrdinal, panzer::GlobalOrdinal > determineYElemSizeAndStart(int yBlock, unsigned int size, unsigned int rank) const
std::string faceBlockName_
std::pair< panzer::GlobalOrdinal, panzer::GlobalOrdinal > determineXElemSizeAndStart(int xBlock, unsigned int size, unsigned int rank) const
void addNodeSets(STK_Interface &mesh) const
Teuchos::Tuple< std::size_t, 3 > procTuple_
void addEdgeBlocks(STK_Interface &mesh) const
virtual ~CubeHexMeshFactory()
Destructor.
panzer::GlobalOrdinal nZElems_
bool buildInterfaceSidesets_
void buildBlock(stk::ParallelMachine machRank, int xBlock, int yBlock, int zBlock, STK_Interface &mesh) const
void initializeWithDefaults()
Teuchos::RCP< STK_Interface > buildMesh(stk::ParallelMachine parallelMach) const
Build the mesh object.
void addFaceBlocks(STK_Interface &mesh) const
panzer::GlobalOrdinal nYElems_
Teuchos::RCP< const Teuchos::ParameterList > getValidParameters() const
From ParameterListAcceptor.
CubeHexMeshFactory()
Constructor.
void addSideSets(STK_Interface &mesh) const
virtual void completeMeshConstruction(STK_Interface &mesh, stk::ParallelMachine parallelMach) const
void setParameterList(const Teuchos::RCP< Teuchos::ParameterList > ¶mList)
From ParameterListAcceptor.
void addSides(STK_Interface &mesh) const
void buildLocalElementIDs()
stk::mesh::Entity findConnectivityById(stk::mesh::Entity src, stk::mesh::EntityRank tgt_rank, unsigned rel_id) const
void initialize(stk::ParallelMachine parallelMach, bool setupIO=true, const bool buildRefinementSupport=false)
stk::mesh::Part * getElementBlockPart(const std::string &name) const
get the block part
static const std::string edgeBlockString
stk::mesh::EntityId elementGlobalId(std::size_t lid) const
stk::mesh::Part * getEdgeBlock(const std::string &name) const
get the block part
bool isInitialized() const
Has initialize been called on this mesh object?
void addEntitiesToFaceBlock(std::vector< stk::mesh::Entity > entities, stk::mesh::Part *faceblock)
stk::mesh::EntityRank getNodeRank() const
void addEdgeBlock(const std::string &elemBlockName, const std::string &edgeBlockName, const stk::topology &topology)
void buildSubcells()
force the mesh to build subcells: edges and faces
void addEntityToNodeset(stk::mesh::Entity entity, stk::mesh::Part *nodeset)
void addElement(const Teuchos::RCP< ElementDescriptor > &ed, stk::mesh::Part *block)
void addNode(stk::mesh::EntityId gid, const std::vector< double > &coord)
void addNodeset(const std::string &name)
void addSideset(const std::string &name, const CellTopologyData *ctData)
stk::mesh::EntityRank getFaceRank() const
Teuchos::RCP< stk::mesh::MetaData > getMetaData() const
stk::mesh::Part * getNodeset(const std::string &name) const
void endModification(const bool find_and_set_shared_nodes_in_stk=true)
unsigned entityOwnerRank(stk::mesh::Entity entity) const
void addEntitiesToEdgeBlock(std::vector< stk::mesh::Entity > entities, stk::mesh::Part *edgeblock)
void addEntityToSideset(stk::mesh::Entity entity, stk::mesh::Part *sideset)
stk::mesh::EntityRank getSideRank() const
void getMyElements(std::vector< stk::mesh::Entity > &elements) const
void addElementBlock(const std::string &name, const CellTopologyData *ctData)
void addFaceBlock(const std::string &elemBlockName, const std::string &faceBlockName, const stk::topology &topology)
Teuchos::RCP< stk::mesh::BulkData > getBulkData() const
static const std::string faceBlockString
stk::mesh::Part * getFaceBlock(const std::string &name) const
get the block part
stk::mesh::EntityRank getEdgeRank() const
stk::mesh::Part * getSideset(const std::string &name) const
void rebalance(STK_Interface &mesh) const
static void parsePeriodicBCList(const Teuchos::RCP< Teuchos::ParameterList > &pl, std::vector< Teuchos::RCP< const PeriodicBC_MatcherBase > > &periodicBC, bool &useBBoxSearch)
double getMeshCoord(const int nx, const double deltaX, const double x0) const
std::vector< Teuchos::RCP< const PeriodicBC_MatcherBase > > periodicBCVec_