Tpetra parallel linear algebra Version of the Day
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Tpetra_CrsGraph_decl.hpp
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1// @HEADER
2// *****************************************************************************
3// Tpetra: Templated Linear Algebra Services Package
4//
5// Copyright 2008 NTESS and the Tpetra contributors.
6// SPDX-License-Identifier: BSD-3-Clause
7// *****************************************************************************
8// @HEADER
9
10#ifndef TPETRA_CRSGRAPH_DECL_HPP
11#define TPETRA_CRSGRAPH_DECL_HPP
12
15
19#include "Tpetra_DistObject.hpp"
20#include "Tpetra_Exceptions.hpp"
21#include "Tpetra_RowGraph.hpp"
22#include "Tpetra_Util.hpp" // need this here for sort2
23#include "Tpetra_Details_WrappedDualView.hpp"
24
25#include "KokkosSparse_findRelOffset.hpp"
26#include "Kokkos_DualView.hpp"
27
28#include "Teuchos_CommHelpers.hpp"
29#include "Teuchos_Describable.hpp"
30#include "Teuchos_OrdinalTraits.hpp"
31#include "Teuchos_ParameterListAcceptorDefaultBase.hpp"
32
33#include "KokkosSparse_StaticCrsGraph.hpp"
34
35#include <functional> // std::function
36#include <memory>
37
38namespace Tpetra {
39
40// Forward declaration for CrsGraph::swap() test
41template <class LocalOrdinal, class GlobalOrdinal, class Node>
42class crsGraph_Swap_Tester;
43
44#ifndef DOXYGEN_SHOULD_SKIP_THIS
45namespace Details {
46template <class LocalOrdinal,
47 class GlobalOrdinal>
48class CrsPadding;
49} // namespace Details
50
51namespace { // (anonymous)
52
53template <class ViewType>
54struct UnmanagedView {
55 static_assert(Kokkos::is_view<ViewType>::value,
56 "ViewType must be a Kokkos::View specialization.");
57 // FIXME (mfh 02 Dec 2015) Right now, this strips away other
58 // memory traits. Christian will add an "AllTraits" enum which is
59 // the enum value of MemoryTraits<T>, that will help us fix this.
60 typedef Kokkos::View<typename ViewType::data_type,
61 typename ViewType::array_layout,
62 typename ViewType::device_type,
63 Kokkos::MemoryUnmanaged>
64 type;
65};
66
67} // namespace
68#endif // DOXYGEN_SHOULD_SKIP_THIS
69
78struct RowInfo {
79 size_t localRow;
80 size_t allocSize;
81 size_t numEntries;
82 size_t offset1D;
83};
84
85enum ELocalGlobal {
86 LocalIndices,
87 GlobalIndices
88};
89
90namespace Details {
122 STORAGE_1D_UNPACKED, //<! 1-D "unpacked" storage
123 STORAGE_1D_PACKED, //<! 1-D "packed" storage
124 STORAGE_UB //<! Invalid value; upper bound on enum values
125};
126
127} // namespace Details
128
187template <class LocalOrdinal,
188 class GlobalOrdinal,
189 class Node>
190class CrsGraph : public RowGraph<LocalOrdinal, GlobalOrdinal, Node>,
191 public DistObject<GlobalOrdinal,
192 LocalOrdinal,
193 GlobalOrdinal,
194 Node>,
195 public Teuchos::ParameterListAcceptorDefaultBase {
196 template <class S, class LO, class GO, class N>
197 friend class CrsMatrix;
198 template <class LO2, class GO2, class N2>
199 friend class CrsGraph;
200 template <class LO, class GO, class N>
201 friend class FECrsGraph;
202
205
206 public:
212 using device_type = typename Node::device_type;
214 using execution_space = typename device_type::execution_space;
215
220 using node_type = Node;
221
224 KokkosSparse::StaticCrsGraph<local_ordinal_type, Kokkos::LayoutLeft,
225 device_type, void, size_t>;
226
228#if KOKKOS_VERSION >= 40799
229 using local_graph_host_type = typename local_graph_device_type::host_mirror_type;
230#else
231 using local_graph_host_type = typename local_graph_device_type::HostMirror;
232#endif
233
240
241 public:
242 // Types used for CrsGraph's storage of local column indices
243 using local_inds_dualv_type =
244 Kokkos::DualView<local_ordinal_type*, device_type>;
245 using local_inds_wdv_type =
247
248 // Types used for CrsGraph's storage of global column indices
249 using global_inds_dualv_type =
250 Kokkos::DualView<global_ordinal_type*, device_type>;
253
254 public:
256 using row_ptrs_device_view_type =
257 typename row_graph_type::row_ptrs_device_view_type;
258 using row_ptrs_host_view_type =
259 typename row_graph_type::row_ptrs_host_view_type;
260
263 typename row_graph_type::local_inds_device_view_type;
264 using local_inds_host_view_type =
265 typename row_graph_type::local_inds_host_view_type;
266 using nonconst_local_inds_host_view_type =
267 typename row_graph_type::nonconst_local_inds_host_view_type;
268
271 typename row_graph_type::global_inds_device_view_type;
272 using global_inds_host_view_type =
273 typename row_graph_type::global_inds_host_view_type;
274 using nonconst_global_inds_host_view_type =
275 typename row_graph_type::nonconst_global_inds_host_view_type;
276
277 using offset_device_view_type =
278 typename row_ptrs_device_view_type::non_const_type;
279
281
282
295 CrsGraph(const Teuchos::RCP<const map_type>& rowMap,
296 const size_t maxNumEntriesPerRow,
297 const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
298
311 CrsGraph(const Teuchos::RCP<const map_type>& rowMap,
312 const Kokkos::DualView<const size_t*, device_type>& numEntPerRow,
313 const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
314
328 CrsGraph(const Teuchos::RCP<const map_type>& rowMap,
329 const Teuchos::ArrayView<const size_t>& numEntPerRow,
330 const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
331
344
348 CrsGraph(const Teuchos::RCP<const map_type>& rowMap,
349 const Teuchos::RCP<const map_type>& colMap,
350 const size_t maxNumEntriesPerRow,
351 const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
352
367 CrsGraph(const Teuchos::RCP<const map_type>& rowMap,
368 const Teuchos::RCP<const map_type>& colMap,
369 const Kokkos::DualView<const size_t*, device_type>& numEntPerRow,
370 const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
371
387 CrsGraph(const Teuchos::RCP<const map_type>& rowMap,
388 const Teuchos::RCP<const map_type>& colMap,
389 const Teuchos::ArrayView<const size_t>& numEntPerRow,
390 const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
391
404 const Teuchos::RCP<const map_type>& rowMap,
405 const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
406
429 CrsGraph(const Teuchos::RCP<const map_type>& rowMap,
430 const Teuchos::RCP<const map_type>& colMap,
431 const typename local_graph_device_type::row_map_type& rowPointers,
432 const typename local_graph_device_type::entries_type::non_const_type& columnIndices,
433 const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
434
457 CrsGraph(const Teuchos::RCP<const map_type>& rowMap,
458 const Teuchos::RCP<const map_type>& colMap,
459 const Teuchos::ArrayRCP<size_t>& rowPointers,
460 const Teuchos::ArrayRCP<local_ordinal_type>& columnIndices,
461 const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
462
484 CrsGraph(const Teuchos::RCP<const map_type>& rowMap,
485 const Teuchos::RCP<const map_type>& colMap,
487 const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
488
516 const Teuchos::RCP<const map_type>& rowMap,
517 const Teuchos::RCP<const map_type>& colMap,
518 const Teuchos::RCP<const map_type>& domainMap = Teuchos::null,
519 const Teuchos::RCP<const map_type>& rangeMap = Teuchos::null,
520 const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
521
527 const Teuchos::RCP<const map_type>& rowMap,
528 const Teuchos::RCP<const map_type>& colMap,
529 const Teuchos::RCP<const map_type>& domainMap,
530 const Teuchos::RCP<const map_type>& rangeMap,
531 const Teuchos::RCP<const import_type>& importer,
532 const Teuchos::RCP<const export_type>& exporter,
533 const Teuchos::RCP<Teuchos::ParameterList>& params =
534 Teuchos::null);
535
577 CrsGraph(const row_ptrs_device_view_type& rowPointers,
579 const Teuchos::RCP<const map_type>& rowMap,
580 const Teuchos::RCP<const map_type>& colMap,
581 const Teuchos::RCP<const map_type>& domainMap,
582 const Teuchos::RCP<const map_type>& rangeMap,
583 const Teuchos::RCP<const import_type>& importer,
584 const Teuchos::RCP<const export_type>& exporter,
585 const Teuchos::RCP<Teuchos::ParameterList>& params =
586 Teuchos::null);
587
590
593
596
599
609 virtual ~CrsGraph() = default;
610
638
656
658
660
662 void
663 setParameterList(const Teuchos::RCP<Teuchos::ParameterList>& params) override;
664
666 Teuchos::RCP<const Teuchos::ParameterList>
667 getValidParameters() const override;
668
670
672
694 void
696 const Teuchos::ArrayView<const global_ordinal_type>& indices);
697
704 void
707 const global_ordinal_type inds[]);
708
710
724 void
726 const Teuchos::ArrayView<const local_ordinal_type>& indices);
727
734 void
737 const local_ordinal_type inds[]);
738
740
750
752
754
762 void globalAssemble();
763
782 void
783 resumeFill(const Teuchos::RCP<Teuchos::ParameterList>& params =
784 Teuchos::null);
785
823 void
824 fillComplete(const Teuchos::RCP<const map_type>& domainMap,
825 const Teuchos::RCP<const map_type>& rangeMap,
826 const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
827
855 void
856 fillComplete(const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
857
886 void
887 expertStaticFillComplete(const Teuchos::RCP<const map_type>& domainMap,
888 const Teuchos::RCP<const map_type>& rangeMap,
889 const Teuchos::RCP<const import_type>& importer =
890 Teuchos::null,
891 const Teuchos::RCP<const export_type>& exporter =
892 Teuchos::null,
893 const Teuchos::RCP<Teuchos::ParameterList>& params =
894 Teuchos::null);
896
898
900 Teuchos::RCP<const Teuchos::Comm<int>> getComm() const override;
901
903 Teuchos::RCP<const map_type> getRowMap() const override;
904
906 Teuchos::RCP<const map_type> getColMap() const override;
907
909 Teuchos::RCP<const map_type> getDomainMap() const override;
910
912 Teuchos::RCP<const map_type> getRangeMap() const override;
913
915 Teuchos::RCP<const import_type> getImporter() const override;
916
918 Teuchos::RCP<const export_type> getExporter() const override;
919
921
923 global_size_t getGlobalNumRows() const override;
924
926
929 global_size_t getGlobalNumCols() const override;
930
932 size_t getLocalNumRows() const override;
933
935
937 size_t getLocalNumCols() const override;
938
940 global_ordinal_type getIndexBase() const override;
941
943
945 global_size_t getGlobalNumEntries() const override;
946
956 size_t getLocalNumEntries() const override;
957
959
960 size_t
962
969 size_t
970 getNumEntriesInLocalRow(local_ordinal_type localRow) const override;
971
991 size_t getLocalAllocationSize() const;
992
1001
1010
1024 size_t getGlobalMaxNumRowEntries() const override;
1025
1030 size_t getLocalMaxNumRowEntries() const override;
1031
1047 bool hasColMap() const override;
1048
1056 bool isLocallyIndexed() const override;
1057
1065 bool isGloballyIndexed() const override;
1066
1068 bool isFillComplete() const override;
1069
1071 bool isFillActive() const;
1072
1080 bool isSorted() const;
1081
1083
1089 bool isStorageOptimized() const;
1090
1096 void
1098 nonconst_global_inds_host_view_type& gblColInds,
1099 size_t& numColInds) const override;
1100
1108 void
1110 nonconst_local_inds_host_view_type& gblColInds,
1111 size_t& numColInds) const override;
1112
1123 void
1126 global_inds_host_view_type& gblColInds) const override;
1127
1130 bool supportsRowViews() const override;
1131
1142 void
1144 const LocalOrdinal lclRow,
1145 local_inds_host_view_type& lclColInds) const override;
1146
1148
1150
1152 std::string description() const override;
1153
1156 void
1157 describe(Teuchos::FancyOStream& out,
1158 const Teuchos::EVerbosityLevel verbLevel =
1159 Teuchos::Describable::verbLevel_default) const override;
1160
1162
1164
1172
1173 virtual bool
1174 checkSizes(const SrcDistObject& source) override;
1175
1176 using dist_object_type::
1179
1180 virtual void
1182 const size_t numSameIDs,
1183 const Kokkos::DualView<const local_ordinal_type*,
1185 const Kokkos::DualView<const local_ordinal_type*,
1187 const CombineMode CM) override;
1188
1191
1192 void
1193 applyCrsPadding(const padding_type& padding,
1194 const bool verbose);
1195
1196 std::unique_ptr<padding_type>
1197 computeCrsPadding(
1199 node_type>& source,
1200 const size_t numSameIDs,
1201 const Kokkos::DualView<const local_ordinal_type*,
1203 const Kokkos::DualView<const local_ordinal_type*,
1205 const bool verbose) const;
1206
1207 // This actually modifies imports by sorting it.
1208 std::unique_ptr<padding_type>
1209 computeCrsPaddingForImports(
1210 const Kokkos::DualView<const local_ordinal_type*,
1212 Kokkos::DualView<packet_type*, buffer_device_type> imports,
1213 Kokkos::DualView<size_t*, buffer_device_type> numPacketsPerLID,
1214 const bool verbose) const;
1215
1216 std::unique_ptr<padding_type>
1217 computePaddingForCrsMatrixUnpack(
1218 const Kokkos::DualView<const local_ordinal_type*,
1220 Kokkos::DualView<char*, buffer_device_type> imports,
1221 Kokkos::DualView<size_t*, buffer_device_type> numPacketsPerLID,
1222 const bool verbose) const;
1223
1224 void
1225 computeCrsPaddingForSameIDs(
1228 node_type>& source,
1229 const local_ordinal_type numSameIDs) const;
1230
1231 void
1232 computeCrsPaddingForPermutedIDs(
1235 node_type>& source,
1236 const Kokkos::DualView<const local_ordinal_type*,
1238 const Kokkos::DualView<const local_ordinal_type*,
1240
1241 virtual void
1242 packAndPrepare(
1243 const SrcDistObject& source,
1244 const Kokkos::DualView<const local_ordinal_type*, buffer_device_type>& exportLIDs,
1245 Kokkos::DualView<packet_type*, buffer_device_type>& exports,
1246 Kokkos::DualView<size_t*, buffer_device_type> numPacketsPerLID,
1247 size_t& constantNumPackets) override;
1248
1253
1254 virtual void
1255 pack(const Teuchos::ArrayView<const local_ordinal_type>& exportLIDs,
1256 Teuchos::Array<global_ordinal_type>& exports,
1257 const Teuchos::ArrayView<size_t>& numPacketsPerLID,
1258 size_t& constantNumPackets) const override;
1259
1260 void
1261 packFillActive(const Teuchos::ArrayView<const local_ordinal_type>& exportLIDs,
1262 Teuchos::Array<global_ordinal_type>& exports,
1263 const Teuchos::ArrayView<size_t>& numPacketsPerLID,
1264 size_t& constantNumPackets) const;
1265
1266 void
1267 packFillActiveNew(const Kokkos::DualView<const local_ordinal_type*,
1269 Kokkos::DualView<packet_type*,
1270 buffer_device_type>& exports,
1271 Kokkos::DualView<size_t*,
1274 size_t& constantNumPackets) const;
1275
1280
1281 virtual void
1282 unpackAndCombine(const Kokkos::DualView<const local_ordinal_type*,
1284 Kokkos::DualView<packet_type*,
1286 imports,
1287 Kokkos::DualView<size_t*,
1290 const size_t constantNumPackets,
1291 const CombineMode combineMode) override;
1292
1294
1296
1339 void
1340 getLocalDiagOffsets(const Kokkos::View<size_t*, device_type, Kokkos::MemoryUnmanaged>& offsets) const;
1341
1343 void
1344 getLocalOffRankOffsets(offset_device_view_type& offsets) const;
1345
1355 void
1356 getLocalDiagOffsets(Teuchos::ArrayRCP<size_t>& offsets) const;
1357
1367 void
1368 setAllIndices(const typename local_graph_device_type::row_map_type& rowPointers,
1369 const typename local_graph_device_type::entries_type::non_const_type& columnIndices);
1370
1380 void
1381 setAllIndices(const Teuchos::ArrayRCP<size_t>& rowPointers,
1382 const Teuchos::ArrayRCP<local_ordinal_type>& columnIndices);
1383
1386 row_ptrs_host_view_type getLocalRowPtrsHost() const;
1387
1390 row_ptrs_device_view_type getLocalRowPtrsDevice() const;
1391
1393 local_inds_host_view_type getLocalIndicesHost() const;
1394
1397
1416 void replaceColMap(const Teuchos::RCP<const map_type>& newColMap);
1417
1437 void
1438 reindexColumns(const Teuchos::RCP<const map_type>& newColMap,
1439 const Teuchos::RCP<const import_type>& newImport = Teuchos::null,
1440 const bool sortIndicesInEachRow = true);
1441
1448 void
1449 replaceDomainMap(const Teuchos::RCP<const map_type>& newDomainMap);
1450
1464 void
1465 replaceDomainMapAndImporter(const Teuchos::RCP<const map_type>& newDomainMap,
1466 const Teuchos::RCP<const import_type>& newImporter);
1467
1474 void
1475 replaceRangeMap(const Teuchos::RCP<const map_type>& newRangeMap);
1476
1490 void
1491 replaceRangeMapAndExporter(const Teuchos::RCP<const map_type>& newRangeMap,
1492 const Teuchos::RCP<const export_type>& newExporter);
1493
1522 virtual void
1523 removeEmptyProcessesInPlace(const Teuchos::RCP<const map_type>& newMap) override;
1525
1526 template <class DestViewType, class SrcViewType,
1528 struct pack_functor {
1529 typedef typename DestViewType::execution_space execution_space;
1530 SrcViewType src;
1531 DestViewType dest;
1532 SrcOffsetViewType src_offset;
1533 DestOffsetViewType dest_offset;
1534 typedef typename DestOffsetViewType::non_const_value_type ScalarIndx;
1535
1536 pack_functor(DestViewType dest_,
1537 const SrcViewType src_,
1539 const SrcOffsetViewType src_offset_)
1540 : src(src_)
1541 , dest(dest_)
1542 , src_offset(src_offset_)
1543 , dest_offset(dest_offset_){};
1544
1546 void operator()(size_t row) const {
1547 ScalarIndx i = src_offset(row);
1548 ScalarIndx j = dest_offset(row);
1549 const ScalarIndx k = dest_offset(row + 1);
1550 for (; j < k; j++, i++) {
1551 dest(j) = src(i);
1552 }
1553 }
1554 };
1555
1556 private:
1557 // Friend declaration for nonmember function.
1558 template <class CrsGraphType>
1559 friend Teuchos::RCP<CrsGraphType>
1560 importAndFillCompleteCrsGraph(const Teuchos::RCP<const CrsGraphType>& sourceGraph,
1561 const Import<typename CrsGraphType::local_ordinal_type,
1562 typename CrsGraphType::global_ordinal_type,
1563 typename CrsGraphType::node_type>& importer,
1564 const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
1565 typename CrsGraphType::global_ordinal_type,
1566 typename CrsGraphType::node_type>>& domainMap,
1567 const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
1568 typename CrsGraphType::global_ordinal_type,
1569 typename CrsGraphType::node_type>>& rangeMap,
1570 const Teuchos::RCP<Teuchos::ParameterList>& params);
1571
1572 // Friend declaration for nonmember function.
1573 template <class CrsGraphType>
1574 friend Teuchos::RCP<CrsGraphType>
1575 importAndFillCompleteCrsGraph(const Teuchos::RCP<const CrsGraphType>& sourceGraph,
1576 const Import<typename CrsGraphType::local_ordinal_type,
1577 typename CrsGraphType::global_ordinal_type,
1578 typename CrsGraphType::node_type>& rowImporter,
1579 const Import<typename CrsGraphType::local_ordinal_type,
1580 typename CrsGraphType::global_ordinal_type,
1581 typename CrsGraphType::node_type>& domainImporter,
1582 const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
1583 typename CrsGraphType::global_ordinal_type,
1584 typename CrsGraphType::node_type>>& domainMap,
1585 const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
1586 typename CrsGraphType::global_ordinal_type,
1587 typename CrsGraphType::node_type>>& rangeMap,
1588 const Teuchos::RCP<Teuchos::ParameterList>& params);
1589
1590 // Friend declaration for nonmember function.
1591 template <class CrsGraphType>
1592 friend Teuchos::RCP<CrsGraphType>
1593 exportAndFillCompleteCrsGraph(const Teuchos::RCP<const CrsGraphType>& sourceGraph,
1594 const Export<typename CrsGraphType::local_ordinal_type,
1595 typename CrsGraphType::global_ordinal_type,
1596 typename CrsGraphType::node_type>& exporter,
1597 const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
1598 typename CrsGraphType::global_ordinal_type,
1599 typename CrsGraphType::node_type>>& domainMap,
1600 const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
1601 typename CrsGraphType::global_ordinal_type,
1602 typename CrsGraphType::node_type>>& rangeMap,
1603 const Teuchos::RCP<Teuchos::ParameterList>& params);
1604
1605 // Friend declaration for nonmember function.
1606 template <class CrsGraphType>
1607 friend Teuchos::RCP<CrsGraphType>
1608 exportAndFillCompleteCrsGraph(const Teuchos::RCP<const CrsGraphType>& sourceGraph,
1609 const Export<typename CrsGraphType::local_ordinal_type,
1610 typename CrsGraphType::global_ordinal_type,
1611 typename CrsGraphType::node_type>& rowExporter,
1612 const Export<typename CrsGraphType::local_ordinal_type,
1613 typename CrsGraphType::global_ordinal_type,
1614 typename CrsGraphType::node_type>& domainExporter,
1615 const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
1616 typename CrsGraphType::global_ordinal_type,
1617 typename CrsGraphType::node_type>>& domainMap,
1618 const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
1619 typename CrsGraphType::global_ordinal_type,
1620 typename CrsGraphType::node_type>>& rangeMap,
1621 const Teuchos::RCP<Teuchos::ParameterList>& params);
1622
1623 public:
1639 void
1640 importAndFillComplete(Teuchos::RCP<CrsGraph<local_ordinal_type, global_ordinal_type, Node>>& destGraph,
1641 const import_type& importer,
1642 const Teuchos::RCP<const map_type>& domainMap,
1643 const Teuchos::RCP<const map_type>& rangeMap,
1644 const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null) const;
1645
1661 void
1662 importAndFillComplete(Teuchos::RCP<CrsGraph<local_ordinal_type, global_ordinal_type, Node>>& destGraph,
1663 const import_type& rowImporter,
1664 const import_type& domainImporter,
1665 const Teuchos::RCP<const map_type>& domainMap,
1666 const Teuchos::RCP<const map_type>& rangeMap,
1667 const Teuchos::RCP<Teuchos::ParameterList>& params) const;
1668
1684 void
1685 exportAndFillComplete(Teuchos::RCP<CrsGraph<local_ordinal_type, global_ordinal_type, Node>>& destGraph,
1686 const export_type& exporter,
1687 const Teuchos::RCP<const map_type>& domainMap = Teuchos::null,
1688 const Teuchos::RCP<const map_type>& rangeMap = Teuchos::null,
1689 const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null) const;
1690
1706 void
1707 exportAndFillComplete(Teuchos::RCP<CrsGraph<local_ordinal_type, global_ordinal_type, Node>>& destGraph,
1708 const export_type& rowExporter,
1709 const export_type& domainExporter,
1710 const Teuchos::RCP<const map_type>& domainMap,
1711 const Teuchos::RCP<const map_type>& rangeMap,
1712 const Teuchos::RCP<Teuchos::ParameterList>& params) const;
1713
1714 private:
1735 void
1736 transferAndFillComplete(Teuchos::RCP<CrsGraph<local_ordinal_type, global_ordinal_type, Node>>& destGraph,
1737 const ::Tpetra::Details::Transfer<local_ordinal_type, global_ordinal_type, Node>& rowTransfer,
1738 const Teuchos::RCP<const ::Tpetra::Details::Transfer<local_ordinal_type, global_ordinal_type, Node>>& domainTransfer,
1739 const Teuchos::RCP<const map_type>& domainMap = Teuchos::null,
1740 const Teuchos::RCP<const map_type>& rangeMap = Teuchos::null,
1741 const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null) const;
1742
1743 protected:
1744 // these structs are conveniences, to cut down on the number of
1745 // arguments to some of the methods below.
1746 struct SLocalGlobalViews {
1747 Teuchos::ArrayView<const global_ordinal_type> ginds;
1748 Teuchos::ArrayView<const local_ordinal_type> linds;
1749 };
1750 struct SLocalGlobalNCViews {
1751 Teuchos::ArrayView<global_ordinal_type> ginds;
1752 Teuchos::ArrayView<local_ordinal_type> linds;
1753 };
1754
1755 bool indicesAreAllocated() const;
1756
1757 void
1758 allocateIndices(const ELocalGlobal lg, const bool verbose = false);
1759
1761
1762
1772 void makeColMap(Teuchos::Array<int>& remotePIDs);
1773
1794 std::pair<size_t, std::string>
1795 makeIndicesLocal(const bool verbose = false);
1796
1805 void
1806 makeImportExport(Teuchos::Array<int>& remotePIDs,
1807 const bool useRemotePIDs);
1808
1810
1812
1847 size_t
1848 insertIndices(RowInfo& rowInfo,
1849 const SLocalGlobalViews& newInds,
1850 const ELocalGlobal lg,
1851 const ELocalGlobal I);
1852
1862 size_t
1864 const global_ordinal_type inputGblColInds[],
1865 const size_t numInputInds);
1866
1876 size_t
1877 insertGlobalIndicesImpl(const RowInfo& rowInfo,
1878 const global_ordinal_type inputGblColInds[],
1879 const size_t numInputInds,
1880 std::function<void(const size_t, const size_t, const size_t)> fun =
1881 std::function<void(const size_t, const size_t, const size_t)>());
1882
1883 void
1884 insertLocalIndicesImpl(const local_ordinal_type lclRow,
1885 const Teuchos::ArrayView<const local_ordinal_type>& gblColInds,
1886 std::function<void(const size_t, const size_t, const size_t)> fun =
1887 std::function<void(const size_t, const size_t, const size_t)>());
1888
1904 size_t
1905 findGlobalIndices(const RowInfo& rowInfo,
1906 const Teuchos::ArrayView<const global_ordinal_type>& indices,
1907 std::function<void(const size_t, const size_t, const size_t)> fun) const;
1908
1920 void
1922 const global_ordinal_type gblColInds[],
1923 const local_ordinal_type numGblColInds);
1924
1936 void
1938 const global_ordinal_type gblColInds[],
1939 const local_ordinal_type numGblColInds);
1940
1945 static const bool useAtomicUpdatesByDefault =
1946#ifdef KOKKOS_ENABLE_SERIAL
1947 !std::is_same<execution_space, Kokkos::Serial>::value;
1948#else
1949 true;
1950#endif // KOKKOS_ENABLE_SERIAL
1951
1953
1955
1957 bool isMerged() const;
1958
1964 void setLocallyModified();
1965
1966 private:
1971 void
1972 sortAndMergeAllIndices(const bool sorted, const bool merged);
1973
1974 // mfh 08 May 2017: I only restore "protected" here for backwards
1975 // compatibility.
1976 protected:
1986 const bool sorted,
1987 const bool merged);
1989
1999 void
2000 setDomainRangeMaps(const Teuchos::RCP<const map_type>& domainMap,
2001 const Teuchos::RCP<const map_type>& rangeMap);
2002
2003 void staticAssertions() const;
2004 void clearGlobalConstants();
2005
2006 public:
2009
2028
2029 bool haveLocalOffRankOffsets() const { return haveLocalOffRankOffsets_; }
2030
2031 protected:
2051 void computeLocalConstants();
2052
2055 RowInfo getRowInfo(const local_ordinal_type myRow) const;
2056
2069 RowInfo getRowInfoFromGlobalRowIndex(const global_ordinal_type gblRow) const;
2070
2071 public:
2080 local_graph_host_type getLocalGraphHost() const;
2081
2082 protected:
2083 void fillLocalGraph(const Teuchos::RCP<Teuchos::ParameterList>& params);
2084
2086 void checkInternalState() const;
2087
2091 void swap(CrsGraph<local_ordinal_type, global_ordinal_type, Node>& graph);
2092
2093 // Friend the tester for CrsGraph::swap
2094 friend class Tpetra::crsGraph_Swap_Tester<local_ordinal_type, global_ordinal_type, Node>;
2095
2097 Teuchos::RCP<const map_type> rowMap_;
2099 Teuchos::RCP<const map_type> colMap_;
2101 Teuchos::RCP<const map_type> rangeMap_;
2103 Teuchos::RCP<const map_type> domainMap_;
2104
2111 Teuchos::RCP<const import_type> importer_;
2112
2118 Teuchos::RCP<const export_type> exporter_;
2119
2125 Teuchos::OrdinalTraits<size_t>::invalid();
2126
2131 Teuchos::OrdinalTraits<global_size_t>::invalid();
2132
2138 Teuchos::OrdinalTraits<global_size_t>::invalid();
2139
2140 private:
2141 // Replacement for device view k_rowPtrs_
2142 // Device view rowPtrsUnpacked_dev_ takes place of k_rowPtrs_
2143 // Host view rowPtrsUnpacked_host_ takes place of copies and use of getEntryOnHost
2144 // Wish this could be a WrappedDualView, but deep_copies in DualView
2145 // don't work with const data views (e.g., StaticCrsGraph::row_map)
2146 // k_rowPtrs_ is offsets wrt the ALLOCATED indices array, not necessarily
2147 // the ACTUAL compressed indices array.
2148 // When !OptimizedStorage, k_rowPtrs_ may differ from ACTUAL compressed
2149 // indices array. (Karen is skeptical that !OptimizedStorage works)
2150 // When OptimizedStorage, rowPtrsUnpacked_ = k_rowPtrsPacked_
2151
2152 row_ptrs_device_view_type rowPtrsUnpacked_dev_;
2153 mutable row_ptrs_host_view_type rowPtrsUnpacked_host_;
2154
2155 // Row offsets into the actual graph local indices
2156 // Device view rowPtrsUnpacked_dev_ takes place of lclGraph_.row_map
2157
2158 row_ptrs_device_view_type rowPtrsPacked_dev_;
2159 mutable row_ptrs_host_view_type rowPtrsPacked_host_;
2160
2162 bool packedUnpackedRowPtrsMatch_ = false;
2163
2164 protected:
2165 void setRowPtrsUnpacked(const row_ptrs_device_view_type& dview) {
2166 packedUnpackedRowPtrsMatch_ = false;
2167 rowPtrsUnpacked_dev_ = dview;
2168 // Make sure stale host rowptrs are not kept
2169 rowPtrsUnpacked_host_ = row_ptrs_host_view_type();
2170 }
2171
2173 const row_ptrs_device_view_type& getRowPtrsUnpackedDevice() const {
2174 return rowPtrsUnpacked_dev_;
2175 }
2176
2178 const row_ptrs_host_view_type& getRowPtrsUnpackedHost() const {
2179 if (rowPtrsUnpacked_host_.extent(0) != rowPtrsUnpacked_dev_.extent(0)) {
2180 // NOTE: not just using create_mirror_view here, because
2181 // we do want host/device to be in different memory, even if we're using a SharedSpace.
2182 // This is so that reads will never trigger a host-device transfer.
2183 // The exception is when 'device' views are HostSpace, then don't make another copy.
2184 if constexpr (std::is_same_v<typename Node::memory_space, Kokkos::HostSpace>) {
2185 rowPtrsUnpacked_host_ = rowPtrsUnpacked_dev_;
2186 } else {
2187 // Have to make this temporary because rowptrs are const-valued
2188 typename row_ptrs_host_view_type::non_const_type rowPtrsTemp(
2189 Kokkos::view_alloc(Kokkos::WithoutInitializing, "rowPtrsUnpacked_host_"), rowPtrsUnpacked_dev_.extent(0));
2190 Kokkos::deep_copy(rowPtrsTemp, rowPtrsUnpacked_dev_);
2191 rowPtrsUnpacked_host_ = rowPtrsTemp;
2192 }
2193 // Also keep packed/unpacked views in sync, if they are known to have the same contents
2194 if (packedUnpackedRowPtrsMatch_) {
2195 rowPtrsPacked_host_ = rowPtrsUnpacked_host_;
2196 }
2197 }
2198 return rowPtrsUnpacked_host_;
2199 }
2200
2201 void setRowPtrsPacked(const row_ptrs_device_view_type& dview) {
2202 packedUnpackedRowPtrsMatch_ = false;
2203 rowPtrsPacked_dev_ = dview;
2204 // Make sure stale host rowptrs are not kept
2205 rowPtrsPacked_host_ = row_ptrs_host_view_type();
2206 }
2207
2209 const row_ptrs_device_view_type& getRowPtrsPackedDevice() const {
2210 return rowPtrsPacked_dev_;
2211 }
2212
2214 const row_ptrs_host_view_type& getRowPtrsPackedHost() const {
2215 if (rowPtrsPacked_host_.extent(0) != rowPtrsPacked_dev_.extent(0)) {
2216 // NOTE: not just using create_mirror_view here, because
2217 // we do want host/device to be in different memory, even if we're using a SharedSpace.
2218 // This is so that reads will never trigger a host-device transfer.
2219 // The exception is when 'device' views are HostSpace, then don't make another copy.
2220 if constexpr (std::is_same_v<typename Node::memory_space, Kokkos::HostSpace>) {
2221 rowPtrsPacked_host_ = rowPtrsPacked_dev_;
2222 } else {
2223 // Have to make this temporary because rowptrs are const-valued
2224 typename row_ptrs_host_view_type::non_const_type rowPtrsTemp(
2225 Kokkos::view_alloc(Kokkos::WithoutInitializing, "rowPtrsPacked_host_"), rowPtrsPacked_dev_.extent(0));
2226 Kokkos::deep_copy(rowPtrsTemp, rowPtrsPacked_dev_);
2227 rowPtrsPacked_host_ = rowPtrsTemp;
2228 }
2229 // Also keep packed/unpacked views in sync, if they are known to have the same contents
2230 if (packedUnpackedRowPtrsMatch_) {
2231 rowPtrsUnpacked_host_ = rowPtrsPacked_host_;
2232 }
2233 }
2234 return rowPtrsPacked_host_;
2235 }
2236
2237 // There are common cases where both packed and unpacked views are set to the same array.
2238 // Doing this in a single call can reduce dataspace on host, and reduce runtime by
2239 // removing a deep_copy from device to host.
2240
2241 void setRowPtrs(const row_ptrs_device_view_type& dview) {
2242 packedUnpackedRowPtrsMatch_ = true;
2243 rowPtrsUnpacked_dev_ = dview;
2244 rowPtrsPacked_dev_ = dview;
2245 // Make sure stale host rowptrs are not kept
2246 rowPtrsUnpacked_host_ = row_ptrs_host_view_type();
2247 rowPtrsPacked_host_ = row_ptrs_host_view_type();
2248 }
2249
2250 // TODO: Make private -- matrix shouldn't access directly the guts of graph
2251
2266
2281
2282 // TODO: Make private -- matrix shouldn't access directly the guts of graph
2283
2293
2294 // TODO: Make private -- matrix shouldn't access directly
2296
2300 typename local_inds_dualv_type::t_host::const_type
2301 getLocalIndsViewHost(const RowInfo& rowinfo) const;
2302
2306 typename local_inds_dualv_type::t_dev::const_type
2308
2312 typename global_inds_dualv_type::t_host::const_type
2314
2318 typename global_inds_dualv_type::t_dev::const_type
2320
2324 typename local_inds_dualv_type::t_host
2326
2327 // FOR NOW...
2328 // KEEP k_numRowEntries_ (though switch from host_mirror_type to Host)
2329 // KEEP k_numAllocPerRow_ (though perhaps switch from host_mirror_type to Host)
2330
2356 typename Kokkos::View<const size_t*, device_type>::host_mirror_type
2358
2369
2371
2372
2394
2402 typedef typename Kokkos::View<size_t*, Kokkos::LayoutLeft, device_type>::host_mirror_type num_row_entries_type;
2403
2404 // typedef Kokkos::View<
2405 // size_t*,
2406 // Kokkos::LayoutLeft,
2407 // Kokkos::Device<
2408 // typename Kokkos::View<
2409 // size_t*,
2410 // Kokkos::LayoutLeft,
2411 // device_type>::host_mirror_type::execution_space,
2412 // Kokkos::HostSpace> > num_row_entries_type;
2413
2421
2427 mutable offset_device_view_type k_offRankOffsets_;
2428
2430
2441 Details::STORAGE_1D_UNPACKED;
2442
2443 bool indicesAreAllocated_ = false;
2444 bool indicesAreLocal_ = false;
2445 bool indicesAreGlobal_ = false;
2446 bool fillComplete_ = false;
2447
2452 bool noRedundancies_ = true;
2458 mutable bool haveLocalOffRankOffsets_ = false;
2459
2460 typedef typename std::map<global_ordinal_type, std::vector<global_ordinal_type>> nonlocals_type;
2461
2463 nonlocals_type nonlocals_;
2464
2480
2481 private:
2483 static bool getDebug();
2484
2487 bool debug_ = getDebug();
2488
2490 static bool getVerbose();
2491
2495 bool verbose_ = getVerbose();
2496
2497 private:
2499 mutable bool need_sync_host_uvm_access = false;
2500
2502 void set_need_sync_host_uvm_access() {
2503 need_sync_host_uvm_access = true;
2504 }
2505
2507 void execute_sync_host_uvm_access() const {
2508 if (need_sync_host_uvm_access) {
2509 Kokkos::fence("CrsGraph::execute_sync_host_uvm_access");
2510 need_sync_host_uvm_access = false;
2511 }
2512 }
2513}; // class CrsGraph
2514
2522template <class LocalOrdinal, class GlobalOrdinal, class Node>
2523Teuchos::RCP<CrsGraph<LocalOrdinal, GlobalOrdinal, Node>>
2525 const Teuchos::RCP<
2527 size_t maxNumEntriesPerRow = 0,
2528 const Teuchos::RCP<Teuchos::ParameterList>& params =
2529 Teuchos::null) {
2530 using Teuchos::rcp;
2533 params));
2534}
2535
2585template <class CrsGraphType>
2586Teuchos::RCP<CrsGraphType>
2587importAndFillCompleteCrsGraph(const Teuchos::RCP<const CrsGraphType>& sourceGraph,
2588 const Import<typename CrsGraphType::local_ordinal_type,
2589 typename CrsGraphType::global_ordinal_type,
2590 typename CrsGraphType::node_type>& importer,
2591 const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
2592 typename CrsGraphType::global_ordinal_type,
2593 typename CrsGraphType::node_type>>& domainMap = Teuchos::null,
2594 const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
2595 typename CrsGraphType::global_ordinal_type,
2596 typename CrsGraphType::node_type>>& rangeMap = Teuchos::null,
2597 const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null) {
2598 Teuchos::RCP<CrsGraphType> destGraph;
2599 sourceGraph->importAndFillComplete(destGraph, importer, domainMap, rangeMap, params);
2600 return destGraph;
2601}
2602
2653template <class CrsGraphType>
2654Teuchos::RCP<CrsGraphType>
2655importAndFillCompleteCrsGraph(const Teuchos::RCP<const CrsGraphType>& sourceGraph,
2656 const Import<typename CrsGraphType::local_ordinal_type,
2657 typename CrsGraphType::global_ordinal_type,
2658 typename CrsGraphType::node_type>& rowImporter,
2659 const Import<typename CrsGraphType::local_ordinal_type,
2660 typename CrsGraphType::global_ordinal_type,
2661 typename CrsGraphType::node_type>& domainImporter,
2662 const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
2663 typename CrsGraphType::global_ordinal_type,
2664 typename CrsGraphType::node_type>>& domainMap,
2665 const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
2666 typename CrsGraphType::global_ordinal_type,
2667 typename CrsGraphType::node_type>>& rangeMap,
2668 const Teuchos::RCP<Teuchos::ParameterList>& params) {
2669 Teuchos::RCP<CrsGraphType> destGraph;
2670 sourceGraph->importAndFillComplete(destGraph, rowImporter, domainImporter, domainMap, rangeMap, params);
2671 return destGraph;
2672}
2673
2707template <class CrsGraphType>
2708Teuchos::RCP<CrsGraphType>
2709exportAndFillCompleteCrsGraph(const Teuchos::RCP<const CrsGraphType>& sourceGraph,
2710 const Export<typename CrsGraphType::local_ordinal_type,
2711 typename CrsGraphType::global_ordinal_type,
2712 typename CrsGraphType::node_type>& exporter,
2713 const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
2714 typename CrsGraphType::global_ordinal_type,
2715 typename CrsGraphType::node_type>>& domainMap = Teuchos::null,
2716 const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
2717 typename CrsGraphType::global_ordinal_type,
2718 typename CrsGraphType::node_type>>& rangeMap = Teuchos::null,
2719 const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null) {
2720 Teuchos::RCP<CrsGraphType> destGraph;
2721 sourceGraph->exportAndFillComplete(destGraph, exporter, domainMap, rangeMap, params);
2722 return destGraph;
2723}
2724
2758template <class CrsGraphType>
2759Teuchos::RCP<CrsGraphType>
2760exportAndFillCompleteCrsGraph(const Teuchos::RCP<const CrsGraphType>& sourceGraph,
2761 const Export<typename CrsGraphType::local_ordinal_type,
2762 typename CrsGraphType::global_ordinal_type,
2763 typename CrsGraphType::node_type>& rowExporter,
2764 const Export<typename CrsGraphType::local_ordinal_type,
2765 typename CrsGraphType::global_ordinal_type,
2766 typename CrsGraphType::node_type>& domainExporter,
2767 const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
2768 typename CrsGraphType::global_ordinal_type,
2769 typename CrsGraphType::node_type>>& domainMap,
2770 const Teuchos::RCP<const Map<typename CrsGraphType::local_ordinal_type,
2771 typename CrsGraphType::global_ordinal_type,
2772 typename CrsGraphType::node_type>>& rangeMap,
2773 const Teuchos::RCP<Teuchos::ParameterList>& params) {
2774 Teuchos::RCP<CrsGraphType> destGraph;
2775 sourceGraph->exportAndFillComplete(destGraph, rowExporter, domainExporter, domainMap, rangeMap, params);
2776 return destGraph;
2777}
2778
2779} // namespace Tpetra
2780
2781#endif // TPETRA_CRSGRAPH_DECL_HPP
Forward declaration of Tpetra::BlockCrsMatrix.
Forward declaration of Tpetra::CrsGraph.
Forward declaration of Tpetra::CrsMatrix.
Stand-alone utility functions and macros.
A distributed graph accessed by rows (adjacency lists) and stored sparsely.
bool isMerged() const
Whether duplicate column indices in each row have been merged.
virtual void unpackAndCombine(const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &importLIDs, Kokkos::DualView< packet_type *, buffer_device_type > imports, Kokkos::DualView< size_t *, buffer_device_type > numPacketsPerLID, const size_t constantNumPackets, const CombineMode combineMode) override
local_inds_dualv_type::t_dev::const_type getLocalIndsViewDevice(const RowInfo &rowinfo) const
Get a const, locally indexed view of the locally owned row myRow, such that rowinfo = getRowInfo(myRo...
global_size_t globalMaxNumRowEntries_
Global maximum of the number of entries in each row.
void reindexColumns(const Teuchos::RCP< const map_type > &newColMap, const Teuchos::RCP< const import_type > &newImport=Teuchos::null, const bool sortIndicesInEachRow=true)
Reindex the column indices in place, and replace the column Map. Optionally, replace the Import objec...
Kokkos::View< size_t *, Kokkos::LayoutLeft, device_type >::host_mirror_type num_row_entries_type
Row offsets for "1-D" storage.
global_inds_dualv_type::t_host::const_type getGlobalIndsViewHost(const RowInfo &rowinfo) const
Get a const, globally indexed view of the locally owned row myRow, such that rowinfo = getRowInfo(myR...
size_t getNumEntriesInLocalRow(local_ordinal_type localRow) const override
Get the number of entries in the given row (local index).
Teuchos::RCP< CrsGraphType > importAndFillCompleteCrsGraph(const Teuchos::RCP< const CrsGraphType > &sourceGraph, const Import< typename CrsGraphType::local_ordinal_type, typename CrsGraphType::global_ordinal_type, typename CrsGraphType::node_type > &rowImporter, const Import< typename CrsGraphType::local_ordinal_type, typename CrsGraphType::global_ordinal_type, typename CrsGraphType::node_type > &domainImporter, const Teuchos::RCP< const Map< typename CrsGraphType::local_ordinal_type, typename CrsGraphType::global_ordinal_type, typename CrsGraphType::node_type > > &domainMap, const Teuchos::RCP< const Map< typename CrsGraphType::local_ordinal_type, typename CrsGraphType::global_ordinal_type, typename CrsGraphType::node_type > > &rangeMap, const Teuchos::RCP< Teuchos::ParameterList > &params)
Nonmember CrsGraph constructor that fuses Import and fillComplete().
Teuchos::RCP< const map_type > getColMap() const override
Returns the Map that describes the column distribution in this graph.
Teuchos::RCP< const Teuchos::ParameterList > getValidParameters() const override
Default parameter list suitable for validation.
Details::EStorageStatus storageStatus_
Status of the graph's storage, when not in a fill-complete state.
::Tpetra::Import< LocalOrdinal, GlobalOrdinal, Node > import_type
The Import specialization used by this class.
global_ordinal_type packet_type
Type of each entry of the DistObject communication buffer.
GlobalOrdinal global_ordinal_type
The type of the graph's global indices.
void insertGlobalIndicesIntoNonownedRows(const global_ordinal_type gblRow, const global_ordinal_type gblColInds[], const local_ordinal_type numGblColInds)
Implementation of insertGlobalIndices for nonowned rows.
Teuchos::RCP< const map_type > rangeMap_
The Map describing the range of the (matrix corresponding to the) graph.
std::pair< size_t, std::string > makeIndicesLocal(const bool verbose=false)
Convert column indices from global to local.
local_inds_device_view_type getLocalIndicesDevice() const
Get a device view of the packed column indicies.
global_size_t getGlobalNumEntries() const override
Returns the global number of entries in the graph.
bool isIdenticalTo(const CrsGraph< LocalOrdinal, GlobalOrdinal, Node > &graph) const
Create a cloned CrsGraph for a different Node type.
Teuchos::RCP< const Teuchos::Comm< int > > getComm() const override
Returns the communicator.
local_inds_wdv_type lclIndsUnpacked_wdv
Local ordinals of column indices for all rows Valid when isLocallyIndexed is true If OptimizedStorage...
bool haveGlobalConstants() const
Returns true if globalConstants have been computed; false otherwise.
void globalAssemble()
Communicate nonlocal contributions to other processes.
RowInfo getRowInfoFromGlobalRowIndex(const global_ordinal_type gblRow) const
Get information about the locally owned row with global index gblRow.
void getLocalDiagOffsets(const Kokkos::View< size_t *, device_type, Kokkos::MemoryUnmanaged > &offsets) const
Get offsets of the diagonal entries in the graph.
size_t findGlobalIndices(const RowInfo &rowInfo, const Teuchos::ArrayView< const global_ordinal_type > &indices, std::function< void(const size_t, const size_t, const size_t)> fun) const
Finds indices in the given row.
CrsGraph(const CrsGraph< local_ordinal_type, global_ordinal_type, node_type > &)=default
Copy constructor (default).
void fillComplete(const Teuchos::RCP< const map_type > &domainMap, const Teuchos::RCP< const map_type > &rangeMap, const Teuchos::RCP< Teuchos::ParameterList > &params=Teuchos::null)
Tell the graph that you are done changing its structure.
global_inds_wdv_type gblInds_wdv
Global ordinals of column indices for all rows.
size_t nodeMaxNumRowEntries_
Local maximum of the number of entries in each row.
size_t sortAndMergeRowIndices(const RowInfo &rowInfo, const bool sorted, const bool merged)
Sort and merge duplicate column indices in the given row.
Teuchos::RCP< const import_type > importer_
The Import from the domain Map to the column Map.
Teuchos::RCP< CrsGraphType > exportAndFillCompleteCrsGraph(const Teuchos::RCP< const CrsGraphType > &sourceGraph, const Export< typename CrsGraphType::local_ordinal_type, typename CrsGraphType::global_ordinal_type, typename CrsGraphType::node_type > &exporter, const Teuchos::RCP< const Map< typename CrsGraphType::local_ordinal_type, typename CrsGraphType::global_ordinal_type, typename CrsGraphType::node_type > > &domainMap=Teuchos::null, const Teuchos::RCP< const Map< typename CrsGraphType::local_ordinal_type, typename CrsGraphType::global_ordinal_type, typename CrsGraphType::node_type > > &rangeMap=Teuchos::null, const Teuchos::RCP< Teuchos::ParameterList > &params=Teuchos::null)
Nonmember CrsGraph constructor that fuses Export and fillComplete().
num_row_entries_type k_numRowEntries_
The number of local entries in each locally owned row.
CrsGraph(CrsGraph< local_ordinal_type, global_ordinal_type, node_type > &&)=default
Move constructor (default).
const row_ptrs_device_view_type & getRowPtrsUnpackedDevice() const
Get the unpacked row pointers on device.
size_t numAllocForAllRows_
The maximum number of entries to allow in each locally owned row.
bool hasColMap() const override
Whether the graph has a column Map.
LocalOrdinal local_ordinal_type
The type of the graph's local indices.
std::string description() const override
Return a one-line human-readable description of this object.
bool isStorageOptimized() const
Returns true if storage has been optimized.
void getGlobalRowCopy(global_ordinal_type gblRow, nonconst_global_inds_host_view_type &gblColInds, size_t &numColInds) const override
Get a copy of the given row, using global indices.
void removeLocalIndices(local_ordinal_type localRow)
Remove all graph indices from the specified local row.
void importAndFillComplete(Teuchos::RCP< CrsGraph< local_ordinal_type, global_ordinal_type, Node > > &destGraph, const import_type &importer, const Teuchos::RCP< const map_type > &domainMap, const Teuchos::RCP< const map_type > &rangeMap, const Teuchos::RCP< Teuchos::ParameterList > &params=Teuchos::null) const
Import from this to the given destination graph, and make the result fill complete.
global_size_t getGlobalNumRows() const override
Returns the number of global rows in the graph.
Teuchos::RCP< const map_type > getDomainMap() const override
Returns the Map associated with the domain of this graph.
void replaceRangeMapAndExporter(const Teuchos::RCP< const map_type > &newRangeMap, const Teuchos::RCP< const export_type > &newExporter)
Replace the current Range Map and Export with the given parameters.
void computeLocalConstants()
Compute local constants, if they have not yet been computed.
void describe(Teuchos::FancyOStream &out, const Teuchos::EVerbosityLevel verbLevel=Teuchos::Describable::verbLevel_default) const override
Print this object to the given output stream with the given verbosity level.
void setParameterList(const Teuchos::RCP< Teuchos::ParameterList > &params) override
Set the given list of parameters (must be nonnull).
static const bool useAtomicUpdatesByDefault
Whether transformLocalValues should use atomic updates by default.
void resumeFill(const Teuchos::RCP< Teuchos::ParameterList > &params=Teuchos::null)
Resume fill operations.
size_t insertIndices(RowInfo &rowInfo, const SLocalGlobalViews &newInds, const ELocalGlobal lg, const ELocalGlobal I)
Insert indices into the given row.
typename Node::device_type device_type
This class' Kokkos device type.
Teuchos::RCP< CrsGraphType > importAndFillCompleteCrsGraph(const Teuchos::RCP< const CrsGraphType > &sourceGraph, const Import< typename CrsGraphType::local_ordinal_type, typename CrsGraphType::global_ordinal_type, typename CrsGraphType::node_type > &importer, const Teuchos::RCP< const Map< typename CrsGraphType::local_ordinal_type, typename CrsGraphType::global_ordinal_type, typename CrsGraphType::node_type > > &domainMap=Teuchos::null, const Teuchos::RCP< const Map< typename CrsGraphType::local_ordinal_type, typename CrsGraphType::global_ordinal_type, typename CrsGraphType::node_type > > &rangeMap=Teuchos::null, const Teuchos::RCP< Teuchos::ParameterList > &params=Teuchos::null)
Nonmember CrsGraph constructor that fuses Import and fillComplete().
void insertGlobalIndicesFiltered(const local_ordinal_type lclRow, const global_ordinal_type gblColInds[], const local_ordinal_type numGblColInds)
Like insertGlobalIndices(), but with column Map filtering.
virtual void copyAndPermute(const SrcDistObject &source, const size_t numSameIDs, const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &permuteToLIDs, const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &permuteFromLIDs, const CombineMode CM) override
RowInfo getRowInfo(const local_ordinal_type myRow) const
Get information about the locally owned row with local index myRow.
global_inds_dualv_type::t_dev::const_type getGlobalIndsViewDevice(const RowInfo &rowinfo) const
Get a const, globally indexed view of the locally owned row myRow, such that rowinfo = getRowInfo(myR...
typename local_graph_device_type::HostMirror local_graph_host_type
The type of the part of the sparse graph on each MPI process.
KokkosSparse::StaticCrsGraph< local_ordinal_type, Kokkos::LayoutLeft, device_type, void, size_t > local_graph_device_type
The type of the part of the sparse graph on each MPI process.
Teuchos::RCP< const map_type > colMap_
The Map describing the distribution of columns of the graph.
bool noRedundancies_
Whether the graph's indices are non-redundant (merged) in each row, on this process.
row_ptrs_host_view_type getLocalRowPtrsHost() const
Get a host view of the packed row offsets.
bool isSorted() const
Whether graph indices in all rows are known to be sorted.
Teuchos::RCP< CrsGraph< LocalOrdinal, GlobalOrdinal, Node > > createCrsGraph(const Teuchos::RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > > &map, size_t maxNumEntriesPerRow=0, const Teuchos::RCP< Teuchos::ParameterList > &params=Teuchos::null)
Nonmember function to create an empty CrsGraph given a row Map and the max number of entries allowed ...
void setAllIndices(const typename local_graph_device_type::row_map_type &rowPointers, const typename local_graph_device_type::entries_type::non_const_type &columnIndices)
Set the graph's data directly, using 1-D storage.
void insertLocalIndices(const local_ordinal_type localRow, const Teuchos::ArrayView< const local_ordinal_type > &indices)
Insert local indices into the graph.
local_inds_host_view_type getLocalIndicesHost() const
Get a host view of the packed column indicies.
bool supportsRowViews() const override
Whether this class implements getLocalRowView() and getGlobalRowView() (it does).
size_t getNumEntriesInGlobalRow(global_ordinal_type globalRow) const override
Returns the current number of entries on this node in the specified global row.
bool isFillComplete() const override
Whether fillComplete() has been called and the graph is in compute mode.
void setDomainRangeMaps(const Teuchos::RCP< const map_type > &domainMap, const Teuchos::RCP< const map_type > &rangeMap)
void swap(CrsGraph< local_ordinal_type, global_ordinal_type, Node > &graph)
Swaps the data from *this with the data and maps from graph.
CrsGraph & operator=(const CrsGraph< local_ordinal_type, global_ordinal_type, node_type > &)=default
Assignment operator (default).
void getGlobalRowView(const global_ordinal_type gblRow, global_inds_host_view_type &gblColInds) const override
Get a const view of the given global row's global column indices.
const row_ptrs_host_view_type & getRowPtrsUnpackedHost() const
Get the unpacked row pointers on host. Lazily make a copy from device.
void exportAndFillComplete(Teuchos::RCP< CrsGraph< local_ordinal_type, global_ordinal_type, Node > > &destGraph, const export_type &exporter, const Teuchos::RCP< const map_type > &domainMap=Teuchos::null, const Teuchos::RCP< const map_type > &rangeMap=Teuchos::null, const Teuchos::RCP< Teuchos::ParameterList > &params=Teuchos::null) const
Export from this to the given destination graph, and make the result fill complete.
void makeColMap(Teuchos::Array< int > &remotePIDs)
Make and set the graph's column Map.
bool haveGlobalConstants_
Whether all processes have computed global constants.
size_t getGlobalMaxNumRowEntries() const override
Maximum number of entries in any row of the graph, over all processes in the graph's communicator.
void checkInternalState() const
Throw an exception if the internal state is not consistent.
typename dist_object_type::buffer_device_type buffer_device_type
Kokkos::Device specialization for communication buffers.
Teuchos::RCP< const map_type > getRangeMap() const override
Returns the Map associated with the domain of this graph.
typename row_graph_type::global_inds_device_view_type global_inds_device_view_type
The Kokkos::View type for views of global ordinals on device and host.
void expertStaticFillComplete(const Teuchos::RCP< const map_type > &domainMap, const Teuchos::RCP< const map_type > &rangeMap, const Teuchos::RCP< const import_type > &importer=Teuchos::null, const Teuchos::RCP< const export_type > &exporter=Teuchos::null, const Teuchos::RCP< Teuchos::ParameterList > &params=Teuchos::null)
Perform a fillComplete on a graph that already has data, via setAllIndices().
bool sortGhostsAssociatedWithEachProcessor_
Whether to require makeColMap() (and therefore fillComplete()) to order column Map GIDs associated wi...
size_t getNumAllocatedEntriesInGlobalRow(global_ordinal_type globalRow) const
Current number of allocated entries in the given row on the calling (MPI) process,...
Teuchos::RCP< const export_type > getExporter() const override
Returns the exporter associated with this graph.
typename device_type::execution_space execution_space
This class' Kokkos execution space.
void makeImportExport(Teuchos::Array< int > &remotePIDs, const bool useRemotePIDs)
Make the Import and Export objects, if needed.
global_ordinal_type getIndexBase() const override
Returns the index base for global indices for this graph.
row_ptrs_device_view_type getLocalRowPtrsDevice() const
Get a device view of the packed row offsets.
void getLocalRowCopy(local_ordinal_type gblRow, nonconst_local_inds_host_view_type &gblColInds, size_t &numColInds) const override
Get a copy of the given row, using local indices.
local_inds_dualv_type::t_host::const_type getLocalIndsViewHost(const RowInfo &rowinfo) const
Get a const, locally indexed view of the locally owned row myRow, such that rowinfo = getRowInfo(myRo...
bool isFillActive() const
Whether resumeFill() has been called and the graph is in edit mode.
Teuchos::RCP< const map_type > getRowMap() const override
Returns the Map that describes the row distribution in this graph.
global_size_t globalNumEntries_
Global number of entries in the graph.
size_t insertGlobalIndicesImpl(const local_ordinal_type lclRow, const global_ordinal_type inputGblColInds[], const size_t numInputInds)
Insert global indices, using an input local row index.
::Tpetra::Export< LocalOrdinal, GlobalOrdinal, Node > export_type
The Export specialization used by this class.
size_t getLocalNumEntries() const override
The local number of entries in the graph.
Teuchos::RCP< const import_type > getImporter() const override
Returns the importer associated with this graph.
local_inds_wdv_type lclIndsPacked_wdv
Local ordinals of column indices for all rows Valid when isLocallyIndexed is true Built during fillCo...
Teuchos::RCP< const map_type > domainMap_
The Map describing the domain of the (matrix corresponding to the) graph.
const row_ptrs_host_view_type & getRowPtrsPackedHost() const
Get the packed row pointers on host. Lazily make a copy from device.
size_t getLocalNumCols() const override
Returns the number of columns connected to the locally owned rows of this graph.
nonlocals_type nonlocals_
Nonlocal data given to insertGlobalIndices.
virtual void pack(const Teuchos::ArrayView< const local_ordinal_type > &exportLIDs, Teuchos::Array< global_ordinal_type > &exports, const Teuchos::ArrayView< size_t > &numPacketsPerLID, size_t &constantNumPackets) const override
void getLocalOffRankOffsets(offset_device_view_type &offsets) const
Get offsets of the off-rank entries in the graph.
global_size_t getGlobalNumCols() const override
Returns the number of global columns in the graph.
typename row_graph_type::local_inds_device_view_type local_inds_device_view_type
The Kokkos::View type for views of local ordinals on device and host.
Kokkos::View< constsize_t *, device_type >::host_mirror_type k_numAllocPerRow_
The maximum number of entries to allow in each locally owned row, per row.
bool indicesAreSorted_
Whether the graph's indices are sorted in each row, on this process.
Node node_type
This class' Kokkos Node type.
Teuchos::RCP< const export_type > exporter_
The Export from the row Map to the range Map.
void insertGlobalIndices(const global_ordinal_type globalRow, const Teuchos::ArrayView< const global_ordinal_type > &indices)
Insert global indices into the graph.
local_inds_dualv_type::t_host getLocalIndsViewHostNonConst(const RowInfo &rowinfo)
Get a ReadWrite locally indexed view of the locally owned row myRow, such that rowinfo = getRowInfo(m...
void replaceDomainMap(const Teuchos::RCP< const map_type > &newDomainMap)
Replace the current domain Map with the given objects.
CrsGraph & operator=(CrsGraph< local_ordinal_type, global_ordinal_type, node_type > &&)=default
Move assignment (default).
void computeGlobalConstants()
Compute global constants, if they have not yet been computed.
size_t getNumAllocatedEntriesInLocalRow(local_ordinal_type localRow) const
Current number of allocated entries in the given row on the calling (MPI) process,...
virtual ~CrsGraph()=default
Destructor (virtual for memory safety of derived classes).
offset_device_view_type k_offRankOffsets_
The offsets for off-rank entries.
void replaceDomainMapAndImporter(const Teuchos::RCP< const map_type > &newDomainMap, const Teuchos::RCP< const import_type > &newImporter)
Replace the current domain Map and Import with the given parameters.
void setLocallyModified()
Report that we made a local modification to its structure.
size_t getLocalAllocationSize() const
The local number of indices allocated for the graph, over all rows on the calling (MPI) process.
void replaceRangeMap(const Teuchos::RCP< const map_type > &newRangeMap)
Replace the current Range Map with the given objects.
Teuchos::RCP< const map_type > rowMap_
The Map describing the distribution of rows of the graph.
Teuchos::RCP< CrsGraphType > exportAndFillCompleteCrsGraph(const Teuchos::RCP< const CrsGraphType > &sourceGraph, const Export< typename CrsGraphType::local_ordinal_type, typename CrsGraphType::global_ordinal_type, typename CrsGraphType::node_type > &rowExporter, const Export< typename CrsGraphType::local_ordinal_type, typename CrsGraphType::global_ordinal_type, typename CrsGraphType::node_type > &domainExporter, const Teuchos::RCP< const Map< typename CrsGraphType::local_ordinal_type, typename CrsGraphType::global_ordinal_type, typename CrsGraphType::node_type > > &domainMap, const Teuchos::RCP< const Map< typename CrsGraphType::local_ordinal_type, typename CrsGraphType::global_ordinal_type, typename CrsGraphType::node_type > > &rangeMap, const Teuchos::RCP< Teuchos::ParameterList > &params)
Nonmember CrsGraph constructor that fuses Export and fillComplete().
const row_ptrs_device_view_type & getRowPtrsPackedDevice() const
Get the packed row pointers on device.
virtual void removeEmptyProcessesInPlace(const Teuchos::RCP< const map_type > &newMap) override
Remove processes owning zero rows from the Maps and their communicator.
void getLocalRowView(const LocalOrdinal lclRow, local_inds_host_view_type &lclColInds) const override
Get a const view of the given local row's local column indices.
bool isGloballyIndexed() const override
Whether the graph's column indices are stored as global indices.
bool isLocallyIndexed() const override
Whether the graph's column indices are stored as local indices.
size_t getLocalMaxNumRowEntries() const override
Maximum number of entries in any row of the graph, on this process.
virtual bool checkSizes(const SrcDistObject &source) override
Compare the source and target (this) objects for compatibility.
local_graph_device_type getLocalGraphDevice() const
Get the local graph.
size_t getLocalNumRows() const override
Returns the number of graph rows owned on the calling node.
void replaceColMap(const Teuchos::RCP< const map_type > &newColMap)
Replace the graph's current column Map with the given Map.
bool haveLocalConstants_
Whether this process has computed local constants.
Struct that holds views of the contents of a CrsMatrix.
Sparse matrix that presents a row-oriented interface that lets users read or modify entries.
Keep track of how much more space a CrsGraph or CrsMatrix needs, when the graph or matrix is the targ...
Base class for distributed Tpetra objects that support data redistribution.
virtual void packAndPrepare(const SrcDistObject &source, const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &exportLIDs, Kokkos::DualView< packet_type *, buffer_device_type > &exports, Kokkos::DualView< size_t *, buffer_device_type > numPacketsPerLID, size_t &constantNumPackets)
Pack data and metadata for communication (sends).
Kokkos::Device< typename device_type::execution_space, buffer_memory_space > buffer_device_type
Kokkos::Device specialization for communication buffers.
virtual void unpackAndCombine(const Kokkos::DualView< const local_ordinal_type *, buffer_device_type > &importLIDs, Kokkos::DualView< packet_type *, buffer_device_type > imports, Kokkos::DualView< size_t *, buffer_device_type > numPacketsPerLID, const size_t constantNumPackets, const CombineMode combineMode)
Perform any unpacking and combining after communication.
Communication plan for data redistribution from a (possibly) multiply-owned to a uniquely-owned distr...
A distributed graph accessed by rows (adjacency lists) and stored sparsely.
Communication plan for data redistribution from a uniquely-owned to a (possibly) multiply-owned distr...
A parallel distribution of indices over processes.
An abstract interface for graphs accessed by rows.
Abstract base class for objects that can be the source of an Import or Export operation.
Implementation details of Tpetra.
EStorageStatus
Status of the graph's or matrix's storage, when not in a fill-complete state.
Namespace Tpetra contains the class and methods constituting the Tpetra library.
CombineMode
Rule for combining data in an Import or Export.
Allocation information for a locally owned row in a CrsGraph or CrsMatrix.