12#include <Teuchos_TimeMonitor.hpp>
13#include <PanzerAdaptersSTK_config.hpp>
14#include <stk_mesh/base/FEMHelpers.hpp>
34 PANZER_FUNC_TIME_MONITOR(
"panzer::CubeHexMeshFactory::buildMesh()");
40 mesh->initialize(parallelMach);
50 PANZER_FUNC_TIME_MONITOR(
"panzer::CubeHexMeshFactory::buildUncomittedMesh()");
54 machRank_ = stk::parallel_machine_rank(parallelMach);
55 machSize_ = stk::parallel_machine_size(parallelMach);
67 const int maxFactor = 50;
70 int factors[maxFactor];
71 for (
int jj = 0; jj < maxFactor; jj++) factors[jj] = 0;
72 for (
int jj = 2; jj < maxFactor; jj++) {
75 int temp = ProcTemp/jj;
76 if (temp*jj == ProcTemp) {
86 for (
int jj = maxFactor-1; jj > 0; jj--) {
87 while (factors[jj] != 0) {
103 "Cannot build CubeHexMeshFactory, the product of \"X Procs\", \"Y Procs\", and \"Z Procs\""
104 " must equal the number of processors.");
118 PANZER_FUNC_TIME_MONITOR(
"panzer::CubeHexMeshFactory::completeMeshConstruction()");
126 Teuchos::FancyOStream out(Teuchos::rcpFromRef(std::cout));
127 out.setOutputToRootOnly(0);
128 out.setShowProcRank(
true);
169 setMyParamList(paramList);
171 x0_ = paramList->get<
double>(
"X0");
172 y0_ = paramList->get<
double>(
"Y0");
173 z0_ = paramList->get<
double>(
"Z0");
175 xf_ = paramList->get<
double>(
"Xf");
176 yf_ = paramList->get<
double>(
"Yf");
177 zf_ = paramList->get<
double>(
"Zf");
179 xBlocks_ = paramList->get<
int>(
"X Blocks");
180 yBlocks_ = paramList->get<
int>(
"Y Blocks");
181 zBlocks_ = paramList->get<
int>(
"Z Blocks");
183 xProcs_ = paramList->get<
int>(
"X Procs");
184 yProcs_ = paramList->get<
int>(
"Y Procs");
185 zProcs_ = paramList->get<
int>(
"Z Procs");
187 nXElems_ = paramList->get<
int>(
"X Elements");
188 nYElems_ = paramList->get<
int>(
"Y Elements");
189 nZElems_ = paramList->get<
int>(
"Z Elements");
198 Teuchos::FancyOStream out(Teuchos::rcpFromRef(std::cout));
199 out.setOutputToRootOnly(0);
200 out.setShowProcRank(
true);
202 out <<
"CubeHexMesh: NOT creating edge blocks because building sub cells disabled" << std::endl;
206 Teuchos::FancyOStream out(Teuchos::rcpFromRef(std::cout));
207 out.setOutputToRootOnly(0);
208 out.setShowProcRank(
true);
210 out <<
"CubeHexMesh: NOT creating face blocks because building sub cells disabled" << std::endl;
221 static RCP<Teuchos::ParameterList> defaultParams;
224 if(defaultParams == Teuchos::null) {
225 defaultParams = rcp(
new Teuchos::ParameterList);
227 defaultParams->set<
double>(
"X0",0.0);
228 defaultParams->set<
double>(
"Y0",0.0);
229 defaultParams->set<
double>(
"Z0",0.0);
231 defaultParams->set<
double>(
"Xf",1.0);
232 defaultParams->set<
double>(
"Yf",1.0);
233 defaultParams->set<
double>(
"Zf",1.0);
235 defaultParams->set<
int>(
"X Blocks",1);
236 defaultParams->set<
int>(
"Y Blocks",1);
237 defaultParams->set<
int>(
"Z Blocks",1);
239 defaultParams->set<
int>(
"X Procs",-1);
240 defaultParams->set<
int>(
"Y Procs",1);
241 defaultParams->set<
int>(
"Z Procs",1);
243 defaultParams->set<
int>(
"X Elements",5);
244 defaultParams->set<
int>(
"Y Elements",5);
245 defaultParams->set<
int>(
"Z Elements",5);
247 defaultParams->set<
bool>(
"Build Interface Sidesets",
false);
249 defaultParams->set<
bool>(
"Build Subcells",
true);
252 defaultParams->set<
bool>(
"Create Edge Blocks",
false,
"Create edge blocks in the mesh");
253 defaultParams->set<
bool>(
"Create Face Blocks",
false,
"Create face blocks in the mesh");
255 Teuchos::ParameterList & bcs = defaultParams->sublist(
"Periodic BCs");
256 bcs.set<
int>(
"Count",0);
259 return defaultParams;
265 RCP<Teuchos::ParameterList> validParams = rcp(
new Teuchos::ParameterList(*
getValidParameters()));
281 typedef shards::Hexahedron<8> HexTopo;
282 const CellTopologyData * ctd = shards::getCellTopologyData<HexTopo>();
283 const CellTopologyData * side_ctd = shards::CellTopology(ctd).getBaseCellTopologyData(2,0);
284 const CellTopologyData * edge_ctd = shards::CellTopology(ctd).getBaseCellTopologyData(1,0);
285 const CellTopologyData * face_ctd = shards::CellTopology(ctd).getBaseCellTopologyData(2,0);
293 std::stringstream ebPostfix;
294 ebPostfix <<
"-" << bx <<
"_" << by <<
"_" << bz;
323 std::stringstream ss;
324 ss <<
"vertical_" << bx-1;
328 std::stringstream ss;
329 ss <<
"horizontal_" << by-1;
333 std::stringstream ss;
334 ss <<
"transverse_" << bz-1;
347 for(
int xBlock=0;xBlock<
xBlocks_;xBlock++) {
348 for(
int yBlock=0;yBlock<
yBlocks_;yBlock++) {
349 for(
int zBlock=0;zBlock<
zBlocks_;zBlock++) {
350 buildBlock(parallelMach,xBlock,yBlock,zBlock,mesh);
364 panzer::GlobalOrdinal myXElems_start = sizeAndStartX.first;
365 panzer::GlobalOrdinal myXElems_end = myXElems_start+sizeAndStartX.second;
366 panzer::GlobalOrdinal myYElems_start = sizeAndStartY.first;
367 panzer::GlobalOrdinal myYElems_end = myYElems_start+sizeAndStartY.second;
368 panzer::GlobalOrdinal myZElems_start = sizeAndStartZ.first;
369 panzer::GlobalOrdinal myZElems_end = myZElems_start+sizeAndStartZ.second;
375 double deltaX = (
xf_-
x0_)/
double(totalXElems);
376 double deltaY = (
yf_-
y0_)/
double(totalYElems);
377 double deltaZ = (
zf_-
z0_)/
double(totalZElems);
379 std::vector<double> coord(3,0.0);
382 for(panzer::GlobalOrdinal nx=myXElems_start;nx<myXElems_end+1;++nx) {
384 for(panzer::GlobalOrdinal ny=myYElems_start;ny<myYElems_end+1;++ny) {
386 for(panzer::GlobalOrdinal nz=myZElems_start;nz<myZElems_end+1;++nz) {
389 mesh.
addNode(nz*(totalYElems+1)*(totalXElems+1)+ny*(totalXElems+1)+nx+1,coord);
394 std::stringstream blockName;
395 blockName <<
"eblock-" << xBlock <<
"_" << yBlock <<
"_" << zBlock;
399 for(panzer::GlobalOrdinal nx=myXElems_start;nx<myXElems_end;++nx) {
400 for(panzer::GlobalOrdinal ny=myYElems_start;ny<myYElems_end;++ny) {
401 for(panzer::GlobalOrdinal nz=myZElems_start;nz<myZElems_end;++nz) {
402 stk::mesh::EntityId gid = totalXElems*totalYElems*nz+totalXElems*ny+nx+1;
403 std::vector<stk::mesh::EntityId> nodes(8);
404 nodes[0] = nx+1+ny*(totalXElems+1) +nz*(totalYElems+1)*(totalXElems+1);
405 nodes[1] = nodes[0]+1;
406 nodes[2] = nodes[1]+(totalXElems+1);
407 nodes[3] = nodes[2]-1;
408 nodes[4] = nodes[0]+(totalYElems+1)*(totalXElems+1);
409 nodes[5] = nodes[1]+(totalYElems+1)*(totalXElems+1);
410 nodes[6] = nodes[2]+(totalYElems+1)*(totalXElems+1);
411 nodes[7] = nodes[3]+(totalYElems+1)*(totalXElems+1);
423 panzer::GlobalOrdinal minElements =
nXElems_/size;
424 panzer::GlobalOrdinal extra =
nXElems_ - minElements*size;
426 TEUCHOS_ASSERT(minElements>0);
430 panzer::GlobalOrdinal nume=0, start=0;
431 if(panzer::GlobalOrdinal(xProcLoc)<extra) {
432 nume = minElements+1;
433 start = xProcLoc*(minElements+1);
437 start = extra*(minElements+1)+(xProcLoc-extra)*minElements;
440 return std::make_pair(start+
nXElems_*xBlock,nume);
449 panzer::GlobalOrdinal minElements =
nYElems_/size;
450 panzer::GlobalOrdinal extra =
nYElems_ - minElements*size;
452 TEUCHOS_ASSERT(minElements>0);
456 panzer::GlobalOrdinal nume=0, start=0;
457 if(panzer::GlobalOrdinal(yProcLoc)<extra) {
458 nume = minElements+1;
459 start = yProcLoc*(minElements+1);
463 start = extra*(minElements+1)+(yProcLoc-extra)*minElements;
466 return std::make_pair(start+
nYElems_*yBlock,nume);
474 panzer::GlobalOrdinal minElements =
nZElems_/size;
475 panzer::GlobalOrdinal extra =
nZElems_ - minElements*size;
477 TEUCHOS_ASSERT(minElements>0);
481 panzer::GlobalOrdinal nume=0, start=0;
482 if(zProcLoc<Teuchos::as<std::size_t>(extra)) {
483 nume = minElements+1;
484 start = zProcLoc*(minElements+1);
488 start = extra*(minElements+1)+(zProcLoc-extra)*minElements;
491 return std::make_pair(start+
nZElems_*zBlock,nume);
503 std::vector<stk::mesh::Entity> localElmts;
506 stk::mesh::EntityId offset[6];
508 offset[1] = offset[0] + totalXElems*totalZElems;
509 offset[2] = offset[1] + totalYElems*totalZElems;
510 offset[3] = offset[2] + totalXElems*totalZElems;
511 offset[4] = offset[3] + totalYElems*totalZElems;
512 offset[5] = offset[4] + totalXElems*totalYElems;
517 std::vector<stk::mesh::Entity>::const_iterator itr;
518 for(itr=localElmts.begin();itr!=localElmts.end();++itr) {
519 stk::mesh::Entity element = (*itr);
522 std::size_t nx,ny,nz;
523 nz = (gid-1) / (totalXElems*totalYElems);
524 gid = (gid-1)-nz*(totalXElems*totalYElems);
525 ny = gid / totalXElems;
526 nx = gid-ny*totalXElems;
528 std::vector<stk::mesh::Part*> parts;
532 mesh.
getBulkData()->declare_element_side(element, 4, parts);
534 if(nz+1==totalZElems) {
536 mesh.
getBulkData()->declare_element_side(element, 5, parts);
541 mesh.
getBulkData()->declare_element_side(element, 0, parts);
543 if(ny+1==totalYElems) {
545 mesh.
getBulkData()->declare_element_side(element, 2, parts);
550 mesh.
getBulkData()->declare_element_side(element, 3, parts);
552 if(nx+1==totalXElems) {
554 mesh.
getBulkData()->declare_element_side(element, 1, parts);
565 const stk::mesh::EntityRank side_rank = mesh.
getSideRank();
572 stk::mesh::Part * left = mesh.
getSideset(
"left");
573 stk::mesh::Part * right = mesh.
getSideset(
"right");
574 stk::mesh::Part * top = mesh.
getSideset(
"top");
575 stk::mesh::Part * bottom = mesh.
getSideset(
"bottom");
576 stk::mesh::Part * front = mesh.
getSideset(
"front");
577 stk::mesh::Part * back = mesh.
getSideset(
"back");
579 std::vector<stk::mesh::Part*> vertical;
580 std::vector<stk::mesh::Part*> horizontal;
581 std::vector<stk::mesh::Part*> transverse;
585 std::stringstream ss;
586 ss <<
"vertical_" << bx-1;
587 vertical.push_back(mesh.
getSideset(ss.str()));
590 std::stringstream ss;
591 ss <<
"horizontal_" << by-1;
592 horizontal.push_back(mesh.
getSideset(ss.str()));
595 std::stringstream ss;
596 ss <<
"transverse_" << bz-1;
597 transverse.push_back(mesh.
getSideset(ss.str()));
601 std::vector<stk::mesh::Entity> localElmts;
607 std::vector<stk::mesh::Entity>::const_iterator itr;
608 for(itr=localElmts.begin();itr!=localElmts.end();++itr) {
609 stk::mesh::Entity element = (*itr);
612 std::size_t nx,ny,nz;
613 nz = (gid-1) / (totalXElems*totalYElems);
614 gid = (gid-1)-nz*(totalXElems*totalYElems);
615 ny = gid / totalXElems;
616 nx = gid-ny*totalXElems;
638 if(nz+1==totalZElems) {
669 if(ny+1==totalYElems) {
700 if(nx+1==totalXElems) {
718 stk::mesh::Part * origin = mesh.
getNodeset(
"origin");
720 Teuchos::RCP<stk::mesh::BulkData> bulkData = mesh.
getBulkData();
724 stk::mesh::Entity node = bulkData->get_entity(mesh.
getNodeRank(),1);
733 Teuchos::RCP<stk::mesh::BulkData> bulkData = mesh.
getBulkData();
734 Teuchos::RCP<stk::mesh::MetaData> metaData = mesh.
getMetaData();
738 stk::mesh::Selector owned_block = metaData->locally_owned_part();
740 std::vector<stk::mesh::Entity> edges;
741 bulkData->get_entities(mesh.
getEdgeRank(), owned_block, edges);
749 Teuchos::RCP<stk::mesh::BulkData> bulkData = mesh.
getBulkData();
750 Teuchos::RCP<stk::mesh::MetaData> metaData = mesh.
getMetaData();
754 stk::mesh::Selector owned_block = metaData->locally_owned_part();
756 std::vector<stk::mesh::Entity> faces;
757 bulkData->get_entities(mesh.
getFaceRank(), owned_block, faces);
764 std::size_t i=0,j=0,k=0;
770 return Teuchos::tuple(i,j,k);
void buildElements(stk::ParallelMachine parallelMach, STK_Interface &mesh) const
virtual Teuchos::RCP< STK_Interface > buildUncommitedMesh(stk::ParallelMachine parallelMach) const
std::string edgeBlockName_
panzer::GlobalOrdinal nXElems_
std::pair< panzer::GlobalOrdinal, panzer::GlobalOrdinal > determineZElemSizeAndStart(int zBlock, unsigned int size, unsigned int rank) const
void buildMetaData(stk::ParallelMachine parallelMach, STK_Interface &mesh) const
Teuchos::Tuple< std::size_t, 3 > procRankToProcTuple(std::size_t procRank) const
what is the 3D tuple describe this processor distribution
std::pair< panzer::GlobalOrdinal, panzer::GlobalOrdinal > determineYElemSizeAndStart(int yBlock, unsigned int size, unsigned int rank) const
std::string faceBlockName_
std::pair< panzer::GlobalOrdinal, panzer::GlobalOrdinal > determineXElemSizeAndStart(int xBlock, unsigned int size, unsigned int rank) const
void addNodeSets(STK_Interface &mesh) const
Teuchos::Tuple< std::size_t, 3 > procTuple_
void addEdgeBlocks(STK_Interface &mesh) const
virtual ~CubeHexMeshFactory()
Destructor.
panzer::GlobalOrdinal nZElems_
bool buildInterfaceSidesets_
void buildBlock(stk::ParallelMachine machRank, int xBlock, int yBlock, int zBlock, STK_Interface &mesh) const
void initializeWithDefaults()
Teuchos::RCP< STK_Interface > buildMesh(stk::ParallelMachine parallelMach) const
Build the mesh object.
void addFaceBlocks(STK_Interface &mesh) const
panzer::GlobalOrdinal nYElems_
Teuchos::RCP< const Teuchos::ParameterList > getValidParameters() const
From ParameterListAcceptor.
CubeHexMeshFactory()
Constructor.
void addSideSets(STK_Interface &mesh) const
virtual void completeMeshConstruction(STK_Interface &mesh, stk::ParallelMachine parallelMach) const
void setParameterList(const Teuchos::RCP< Teuchos::ParameterList > ¶mList)
From ParameterListAcceptor.
void addSides(STK_Interface &mesh) const
void buildLocalElementIDs()
stk::mesh::Entity findConnectivityById(stk::mesh::Entity src, stk::mesh::EntityRank tgt_rank, unsigned rel_id) const
void initialize(stk::ParallelMachine parallelMach, bool setupIO=true, const bool buildRefinementSupport=false)
stk::mesh::Part * getElementBlockPart(const std::string &name) const
get the block part
static const std::string edgeBlockString
stk::mesh::EntityId elementGlobalId(std::size_t lid) const
stk::mesh::Part * getEdgeBlock(const std::string &name) const
get the block part
bool isInitialized() const
Has initialize been called on this mesh object?
void addEntitiesToFaceBlock(std::vector< stk::mesh::Entity > entities, stk::mesh::Part *faceblock)
stk::mesh::EntityRank getNodeRank() const
void addEdgeBlock(const std::string &elemBlockName, const std::string &edgeBlockName, const stk::topology &topology)
void buildSubcells()
force the mesh to build subcells: edges and faces
void addEntityToNodeset(stk::mesh::Entity entity, stk::mesh::Part *nodeset)
void addElement(const Teuchos::RCP< ElementDescriptor > &ed, stk::mesh::Part *block)
void addNode(stk::mesh::EntityId gid, const std::vector< double > &coord)
void addNodeset(const std::string &name)
void addSideset(const std::string &name, const CellTopologyData *ctData)
stk::mesh::EntityRank getFaceRank() const
Teuchos::RCP< stk::mesh::MetaData > getMetaData() const
stk::mesh::Part * getNodeset(const std::string &name) const
void endModification(const bool find_and_set_shared_nodes_in_stk=true)
unsigned entityOwnerRank(stk::mesh::Entity entity) const
void addEntitiesToEdgeBlock(std::vector< stk::mesh::Entity > entities, stk::mesh::Part *edgeblock)
void addEntityToSideset(stk::mesh::Entity entity, stk::mesh::Part *sideset)
stk::mesh::EntityRank getSideRank() const
void getMyElements(std::vector< stk::mesh::Entity > &elements) const
void addElementBlock(const std::string &name, const CellTopologyData *ctData)
void addFaceBlock(const std::string &elemBlockName, const std::string &faceBlockName, const stk::topology &topology)
Teuchos::RCP< stk::mesh::BulkData > getBulkData() const
static const std::string faceBlockString
stk::mesh::Part * getFaceBlock(const std::string &name) const
get the block part
stk::mesh::EntityRank getEdgeRank() const
stk::mesh::Part * getSideset(const std::string &name) const
void rebalance(STK_Interface &mesh) const
static void parsePeriodicBCList(const Teuchos::RCP< Teuchos::ParameterList > &pl, std::vector< Teuchos::RCP< const PeriodicBC_MatcherBase > > &periodicBC, bool &useBBoxSearch)
double getMeshCoord(const int nx, const double deltaX, const double x0) const
std::vector< Teuchos::RCP< const PeriodicBC_MatcherBase > > periodicBCVec_