Tpetra_MatrixIO_def.hpp

// @HEADER
// *****************************************************************************
//          Tpetra: Templated Linear Algebra Services Package
//
// Copyright 2008 NTESS and the Tpetra contributors.
// SPDX-License-Identifier: BSD-3-Clause
// *****************************************************************************
// @HEADER
 
#ifndef TPETRA_MATRIX_IO_DEF
#define TPETRA_MATRIX_IO_DEF
 
#include "Tpetra_CrsMatrix.hpp"
#include "Tpetra_MatrixIO.hpp"
#include <iostream>
 
namespace Tpetra {
namespace Utils {
 
template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
void readHBMatrix(const std::string &filename,
                  const Teuchos::RCP<const Teuchos::Comm<int> > &comm,
                  Teuchos::RCP<Tpetra::CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node> > &A,
                  Teuchos::RCP<const Tpetra::Map<LocalOrdinal, GlobalOrdinal, Node> > rowMap,
                  const Teuchos::RCP<Teuchos::ParameterList> &params) {
  typedef Tpetra::Map<LocalOrdinal, GlobalOrdinal, Node> map_type;
 
  const int myRank = comm->getRank();
  int numRows, numCols, numNZ;
  Teuchos::ArrayRCP<Scalar> svals;
  Teuchos::ArrayRCP<GlobalOrdinal> colinds;
  Teuchos::ArrayRCP<int> rowptrs;
  Teuchos::ArrayRCP<size_t> nnzPerRow;
  int fail = 0;
  if (myRank == 0) {
    bool isSymmetric = false;
    Teuchos::ArrayRCP<double> dvals;
    Teuchos::ArrayRCP<int> colptrs, rowinds;
    std::string type;
    Tpetra::Utils::readHBMatDouble(filename, numRows, numCols, numNZ, type, colptrs, rowinds, dvals);
    TEUCHOS_TEST_FOR_EXCEPT(type.size() != 3);
    if (type[0] != 'R' && type[0] != 'r') {
      // only real matrices right now
      fail = 1;
    }
    if (fail == 0 && numNZ > 0) {
      if (type[1] == 'S' || type[1] == 's') {
        isSymmetric = true;
      } else {
        isSymmetric = false;
      }
    }
    if (fail == 0 && numNZ > 0) {
      // find num non-zero per row
      nnzPerRow = Teuchos::arcp<size_t>(numRows);
      std::fill(nnzPerRow.begin(), nnzPerRow.end(), 0);
      for (Teuchos::ArrayRCP<int>::const_iterator ri = rowinds.begin(); ri != rowinds.end(); ++ri) {
        // count each row index towards its row
        ++nnzPerRow[*ri - 1];
      }
      if (isSymmetric) {
        // count each column toward the corresponding row as well
        for (int c = 0; c < numCols; ++c) {
          // the diagonal was already counted; neglect it, if it exists
          for (int i = colptrs[c] - 1; i != colptrs[c + 1] - 1; ++i) {
            if (rowinds[i] != c + 1) {
              ++nnzPerRow[c];
              ++numNZ;
            }
          }
        }
      }
      // allocate/set new matrix data
      svals      = Teuchos::arcp<Scalar>(numNZ);
      colinds    = Teuchos::arcp<GlobalOrdinal>(numNZ);
      rowptrs    = Teuchos::arcp<int>(numRows + 1);
      rowptrs[0] = 0;
#ifdef HAVE_TPETRA_DEBUG
      Teuchos::ArrayRCP<size_t> nnzPerRow_debug(nnzPerRow.size());
      std::copy(nnzPerRow.begin(), nnzPerRow.end(), nnzPerRow_debug.begin());
#endif
      for (int j = 1; j <= numRows; ++j) {
        rowptrs[j]       = rowptrs[j - 1] + nnzPerRow[j - 1];
        nnzPerRow[j - 1] = 0;
      }
      // translate from column-oriented to row-oriented
      for (int col = 0; col < numCols; ++col) {
        for (int i = colptrs[col] - 1; i != colptrs[col + 1] - 1; ++i) {
          const int row = rowinds[i] - 1;
          // add entry to (row,col), with value dvals[i]
          const size_t entry = rowptrs[row] + nnzPerRow[row];
          svals[entry]       = Teuchos::as<Scalar>(dvals[i]);
          colinds[entry]     = Teuchos::as<GlobalOrdinal>(col);
          ++nnzPerRow[row];
          if (isSymmetric && row != col) {
            // add entry to (col,row), with value dvals[i]
            const size_t symentry = rowptrs[col] + nnzPerRow[col];
            svals[symentry]       = Teuchos::as<Scalar>(dvals[i]);
            colinds[symentry]     = Teuchos::as<GlobalOrdinal>(row);
            ++nnzPerRow[col];
          }
        }
      }
#ifdef HAVE_TPETRA_DEBUG
      {
        bool isequal = true;
        typename Teuchos::ArrayRCP<size_t>::const_iterator it1, it2;
        for (it1 = nnzPerRow.begin(), it2 = nnzPerRow_debug.begin(); it1 != nnzPerRow.end(); ++it1, ++it2) {
          if (*it1 != *it2) {
            isequal = false;
            break;
          }
        }
        TEUCHOS_TEST_FOR_EXCEPTION(!isequal || nnzPerRow.size() != nnzPerRow_debug.size(), std::logic_error,
                                   "Tpetra::Utils::readHBMatrix(): Logic error.");
      }
#endif
    }
    // std::cout << "Matrix " << filename << " of type " << type << ": " << numRows << " by " << numCols << ", " << numNZ << " nonzeros" << std::endl;
  }
  // check for read errors
  broadcast(*comm, 0, &fail);
  TEUCHOS_TEST_FOR_EXCEPTION(fail == 1, std::runtime_error, "Tpetra::Utils::readHBMatrix() can only read Real matrices.");
  // distribute global matrix info
  broadcast(*comm, 0, &numRows);
  broadcast(*comm, 0, &numCols);
  // create map with uniform partitioning
  if (rowMap == Teuchos::null) {
    rowMap = Teuchos::rcp(new map_type(static_cast<global_size_t>(numRows),
                                       static_cast<GlobalOrdinal>(0),
                                       comm, GloballyDistributed));
  } else {
    TEUCHOS_TEST_FOR_EXCEPTION(rowMap->getGlobalNumElements() != (global_size_t)numRows, std::runtime_error,
                               "Tpetra::Utils::readHBMatrix(): specified map has incorrect number of elements.");
    TEUCHOS_TEST_FOR_EXCEPTION(rowMap->isDistributed() == false && comm->getSize() > 1, std::runtime_error,
                               "Tpetra::Utils::readHBMatrix(): specified map is not distributed.");
  }
  Teuchos::Array<size_t> myNNZ(rowMap->getLocalNumElements());
  if (myRank == 0) {
    LocalOrdinal numRowsAlreadyDistributed = rowMap->getLocalNumElements();
    std::copy(nnzPerRow.begin(), nnzPerRow.begin() + numRowsAlreadyDistributed, myNNZ.begin());
    for (int p = 1; p < Teuchos::size(*comm); ++p) {
      size_t numRowsForP;
      Teuchos::receive(*comm, p, &numRowsForP);
      if (numRowsForP) {
        Teuchos::send<int, size_t>(*comm, numRowsForP, nnzPerRow(numRowsAlreadyDistributed, numRowsForP).getRawPtr(), p);
        numRowsAlreadyDistributed += numRowsForP;
      }
    }
  } else {
    const size_t numMyRows = rowMap->getLocalNumElements();
    Teuchos::send(*comm, numMyRows, 0);
    if (numMyRows) {
      Teuchos::receive<int, size_t>(*comm, 0, numMyRows, myNNZ(0, numMyRows).getRawPtr());
    }
  }
  nnzPerRow = Teuchos::null;
  // create column map
  Teuchos::RCP<const map_type> domMap;
  if (numRows == numCols) {
    domMap = rowMap;
  } else {
    domMap = createUniformContigMapWithNode<LocalOrdinal, GlobalOrdinal, Node>(numCols, comm);
  }
  A = rcp(new Tpetra::CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node>(rowMap, myNNZ()));
  // free this locally, A will keep it allocated as long as it is needed by A (up until allocation of nonzeros)
  {
    // Classic idiom for freeing an std::vector; resize doesn't
    // promise deallocation.
    Teuchos::Array<size_t> empty;
    std::swap(myNNZ, empty);
  }
  if (myRank == 0 && numNZ > 0) {
    for (int r = 0; r < numRows; ++r) {
      const LocalOrdinal nnz = rowptrs[r + 1] - rowptrs[r];
      if (nnz > 0) {
        Teuchos::ArrayView<const GlobalOrdinal> inds = colinds(rowptrs[r], nnz);
        Teuchos::ArrayView<const Scalar> vals        = svals(rowptrs[r], nnz);
        A->insertGlobalValues(r, inds, vals);
      }
    }
  }
  // don't need these anymore
  colinds = Teuchos::null;
  svals   = Teuchos::null;
  rowptrs = Teuchos::null;
  A->fillComplete(domMap, rowMap, params);
}
 
}  // namespace Utils
}  // namespace Tpetra
 
//
// Explicit instantiation macro
//
// Must be expanded from within the Tpetra::Utils namespace!
//
 
#define TPETRA_MATRIXIO_INSTANT(SCALAR, LO, GO, NODE)                                  \
  template void                                                                        \
  readHBMatrix<SCALAR, LO, GO, NODE>(const std::string &,                              \
                                     const Teuchos::RCP<const Teuchos::Comm<int> > &,  \
                                     Teuchos::RCP<CrsMatrix<SCALAR, LO, GO, NODE> > &, \
                                     Teuchos::RCP<const Tpetra::Map<LO, GO, NODE> >,   \
                                     const Teuchos::RCP<Teuchos::ParameterList> &);
 
#endif