VanDerPolModel_impl.hpp

Go to the documentation of this file.

//@HEADER
// *****************************************************************************
//          Tempus: Time Integration and Sensitivity Analysis Package
//
// Copyright 2017 NTESS and the Tempus contributors.
// SPDX-License-Identifier: BSD-3-Clause
// *****************************************************************************
//@HEADER
 
#ifndef TEMPUS_TEST_VANDERPOL_MODEL_IMPL_HPP
#define TEMPUS_TEST_VANDERPOL_MODEL_IMPL_HPP
 
#include "Teuchos_StandardParameterEntryValidators.hpp"
 
#include "Thyra_DefaultSpmdVectorSpace.hpp"
#include "Thyra_DetachedVectorView.hpp"
#include "Thyra_DetachedMultiVectorView.hpp"
#include "Thyra_DefaultSerialDenseLinearOpWithSolveFactory.hpp"
#include "Thyra_DefaultMultiVectorLinearOpWithSolve.hpp"
#include "Thyra_DefaultLinearOpSource.hpp"
#include "Thyra_VectorStdOps.hpp"
 
#include <iostream>
 
namespace Tempus_Test {
 
template <class Scalar>
VanDerPolModel<Scalar>::VanDerPolModel(
    Teuchos::RCP<Teuchos::ParameterList> pList_)
{
  isInitialized_     = false;
  dim_               = 2;
  Np_                = 1;  // Number of parameter vectors (1)
  np_                = 1;  // Number of parameters in this vector (1)
  Ng_                = 0;  // Number of observation functions (0)
  ng_                = 0;  // Number of elements in this observation function (0)
  acceptModelParams_ = false;
  haveIC_            = true;
  epsilon_           = 1.0e-06;
  x0_ic_             = 2.0;
  x1_ic_             = 0.0;
  t0_ic_             = 0.0;
 
  // Create x_space and f_space
  x_space_ = Thyra::defaultSpmdVectorSpace<Scalar>(dim_);
  f_space_ = Thyra::defaultSpmdVectorSpace<Scalar>(dim_);
  // Create p_space and g_space
  p_space_ = Thyra::defaultSpmdVectorSpace<Scalar>(np_);
  g_space_ = Thyra::defaultSpmdVectorSpace<Scalar>(ng_);
 
  setParameterList(pList_);
}
 
template <class Scalar>
Thyra::ModelEvaluatorBase::InArgs<Scalar>
VanDerPolModel<Scalar>::getExactSolution(double /*t*/) const
{
  TEUCHOS_TEST_FOR_EXCEPTION(
      true, std::logic_error,
      "Error - No exact solution for van der Pol problem!\n");
  return (inArgs_);
}
 
template <class Scalar>
Thyra::ModelEvaluatorBase::InArgs<Scalar>
VanDerPolModel<Scalar>::getExactSensSolution(int /*j*/, double /*t*/) const
{
  TEUCHOS_TEST_FOR_EXCEPTION(
      !isInitialized_, std::logic_error,
      "Error - No exact sensitivities for van der Pol problem!\n");
  return (inArgs_);
}
 
template <class Scalar>
Teuchos::RCP<const Thyra::VectorSpaceBase<Scalar> >
VanDerPolModel<Scalar>::get_x_space() const
{
  return x_space_;
}
 
template <class Scalar>
Teuchos::RCP<const Thyra::VectorSpaceBase<Scalar> >
VanDerPolModel<Scalar>::get_f_space() const
{
  return f_space_;
}
 
template <class Scalar>
Thyra::ModelEvaluatorBase::InArgs<Scalar>
VanDerPolModel<Scalar>::getNominalValues() const
{
  TEUCHOS_TEST_FOR_EXCEPTION(!isInitialized_, std::logic_error,
                             "Error, setupInOutArgs_ must be called first!\n");
  return nominalValues_;
}
 
template <class Scalar>
Teuchos::RCP<Thyra::LinearOpWithSolveBase<Scalar> >
VanDerPolModel<Scalar>::create_W() const
{
  using Teuchos::RCP;
  RCP<const Thyra::LinearOpWithSolveFactoryBase<Scalar> > W_factory =
      this->get_W_factory();
  RCP<Thyra::LinearOpBase<Scalar> > matrix = this->create_W_op();
  {
    // 01/20/09 tscoffe:  This is a total hack to provide a full rank matrix to
    // linearOpWithSolve because it ends up factoring the matrix during
    // initialization, which it really shouldn't do, or I'm doing something
    // wrong here.   The net effect is that I get exceptions thrown in
    // optimized mode due to the matrix being rank deficient unless I do this.
    RCP<Thyra::MultiVectorBase<Scalar> > multivec =
        Teuchos::rcp_dynamic_cast<Thyra::MultiVectorBase<Scalar> >(matrix,
                                                                   true);
    {
      RCP<Thyra::VectorBase<Scalar> > vec = Thyra::createMember(x_space_);
      {
        Thyra::DetachedVectorView<Scalar> vec_view(*vec);
        vec_view[0] = 0.0;
        vec_view[1] = 1.0;
      }
      V_V(multivec->col(0).ptr(), *vec);
      {
        Thyra::DetachedVectorView<Scalar> vec_view(*vec);
        vec_view[0] = 1.0;
        vec_view[1] = 0.0;
      }
      V_V(multivec->col(1).ptr(), *vec);
    }
  }
  RCP<Thyra::LinearOpWithSolveBase<Scalar> > W =
      Thyra::linearOpWithSolve<Scalar>(*W_factory, matrix);
 
  return W;
}
 
template <class Scalar>
Teuchos::RCP<Thyra::LinearOpBase<Scalar> > VanDerPolModel<Scalar>::create_W_op()
    const
{
  Teuchos::RCP<Thyra::MultiVectorBase<Scalar> > matrix =
      Thyra::createMembers(x_space_, dim_);
  return (matrix);
}
 
template <class Scalar>
Teuchos::RCP<const Thyra::LinearOpWithSolveFactoryBase<Scalar> >
VanDerPolModel<Scalar>::get_W_factory() const
{
  Teuchos::RCP<Thyra::LinearOpWithSolveFactoryBase<Scalar> > W_factory =
      Thyra::defaultSerialDenseLinearOpWithSolveFactory<Scalar>();
  return W_factory;
}
 
template <class Scalar>
Thyra::ModelEvaluatorBase::InArgs<Scalar> VanDerPolModel<Scalar>::createInArgs()
    const
{
  setupInOutArgs_();
  return inArgs_;
}
 
// Private functions overridden from ModelEvaluatorDefaultBase
 
template <class Scalar>
Thyra::ModelEvaluatorBase::OutArgs<Scalar>
VanDerPolModel<Scalar>::createOutArgsImpl() const
{
  setupInOutArgs_();
  return outArgs_;
}
 
template <class Scalar>
void VanDerPolModel<Scalar>::evalModelImpl(
    const Thyra::ModelEvaluatorBase::InArgs<Scalar> &inArgs,
    const Thyra::ModelEvaluatorBase::OutArgs<Scalar> &outArgs) const
{
  using Teuchos::RCP;
  TEUCHOS_TEST_FOR_EXCEPTION(!isInitialized_, std::logic_error,
                             "Error, setupInOutArgs_ must be called first!\n");
 
  const RCP<const Thyra::VectorBase<Scalar> > x_in =
      inArgs.get_x().assert_not_null();
  Thyra::ConstDetachedVectorView<Scalar> x_in_view(*x_in);
 
  // double t = inArgs.get_t();
  Scalar epsilon = epsilon_;
  if (acceptModelParams_) {
    const RCP<const Thyra::VectorBase<Scalar> > p_in =
        inArgs.get_p(0).assert_not_null();
    Thyra::ConstDetachedVectorView<Scalar> p_in_view(*p_in);
    epsilon = p_in_view[0];
  }
 
  Scalar beta = inArgs.get_beta();
 
  const RCP<Thyra::VectorBase<Scalar> > f_out   = outArgs.get_f();
  const RCP<Thyra::LinearOpBase<Scalar> > W_out = outArgs.get_W_op();
  RCP<Thyra::MultiVectorBase<Scalar> > DfDp_out;
  if (acceptModelParams_) {
    Thyra::ModelEvaluatorBase::Derivative<Scalar> DfDp = outArgs.get_DfDp(0);
    DfDp_out                                           = DfDp.getMultiVector();
  }
 
  if (inArgs.get_x_dot().is_null()) {
    // Evaluate the Explicit ODE f(x,t) [= xdot]
    if (!is_null(f_out)) {
      Thyra::DetachedVectorView<Scalar> f_out_view(*f_out);
      f_out_view[0] = x_in_view[1];
      f_out_view[1] =
          ((1.0 - x_in_view[0] * x_in_view[0]) * x_in_view[1] - x_in_view[0]) /
          epsilon;
    }
    if (!is_null(W_out)) {
      RCP<Thyra::MultiVectorBase<Scalar> > matrix =
          Teuchos::rcp_dynamic_cast<Thyra::MultiVectorBase<Scalar> >(W_out,
                                                                     true);
      Thyra::DetachedMultiVectorView<Scalar> matrix_view(*matrix);
      matrix_view(0, 0) = 0.0;    // d(f0)/d(x0_n)
      matrix_view(0, 1) = +beta;  // d(f0)/d(x1_n)
      matrix_view(1, 0) = -beta * (2.0 * x_in_view[0] * x_in_view[1] + 1.0) /
                          epsilon;  // d(f1)/d(x0_n)
      matrix_view(1, 1) = beta * (1.0 - x_in_view[0] * x_in_view[0]) /
                          epsilon;  // d(f1)/d(x1_n)
      // Note: alpha = d(xdot)/d(x_n) and beta = d(x)/d(x_n)
    }
    if (!is_null(DfDp_out)) {
      Thyra::DetachedMultiVectorView<Scalar> DfDp_out_view(*DfDp_out);
      DfDp_out_view(0, 0) = 0.0;
      DfDp_out_view(1, 0) =
          -((1.0 - x_in_view[0] * x_in_view[0]) * x_in_view[1] - x_in_view[0]) /
          (epsilon * epsilon);
    }
  }
  else {
    // Evaluate the implicit ODE f(xdot, x, t) [= 0]
    RCP<const Thyra::VectorBase<Scalar> > x_dot_in;
    x_dot_in     = inArgs.get_x_dot().assert_not_null();
    Scalar alpha = inArgs.get_alpha();
    if (!is_null(f_out)) {
      Thyra::DetachedVectorView<Scalar> f_out_view(*f_out);
      Thyra::ConstDetachedVectorView<Scalar> x_dot_in_view(*x_dot_in);
      f_out_view[0] = x_dot_in_view[0] - x_in_view[1];
      f_out_view[1] =
          x_dot_in_view[1] -
          ((1.0 - x_in_view[0] * x_in_view[0]) * x_in_view[1] - x_in_view[0]) /
              epsilon;
    }
    if (!is_null(W_out)) {
      RCP<Thyra::MultiVectorBase<Scalar> > matrix =
          Teuchos::rcp_dynamic_cast<Thyra::MultiVectorBase<Scalar> >(W_out,
                                                                     true);
      Thyra::DetachedMultiVectorView<Scalar> matrix_view(*matrix);
      matrix_view(0, 0) = alpha;  // d(f0)/d(x0_n)
      matrix_view(0, 1) = -beta;  // d(f0)/d(x1_n)
      matrix_view(1, 0) = beta * (2.0 * x_in_view[0] * x_in_view[1] + 1.0) /
                          epsilon;  // d(f1)/d(x0_n)
      matrix_view(1, 1) = alpha - beta * (1.0 - x_in_view[0] * x_in_view[0]) /
                                      epsilon;  // d(f1)/d(x1_n)
      // Note: alpha = d(xdot)/d(x_n) and beta = d(x)/d(x_n)
    }
    if (!is_null(DfDp_out)) {
      Thyra::DetachedMultiVectorView<Scalar> DfDp_out_view(*DfDp_out);
      DfDp_out_view(0, 0) = 0.0;
      DfDp_out_view(1, 0) =
          ((1.0 - x_in_view[0] * x_in_view[0]) * x_in_view[1] - x_in_view[0]) /
          (epsilon * epsilon);
    }
  }
}
 
template <class Scalar>
Teuchos::RCP<const Thyra::VectorSpaceBase<Scalar> >
VanDerPolModel<Scalar>::get_p_space(int l) const
{
  if (!acceptModelParams_) {
    return Teuchos::null;
  }
  TEUCHOS_ASSERT_IN_RANGE_UPPER_EXCLUSIVE(l, 0, Np_);
  return p_space_;
}
 
template <class Scalar>
Teuchos::RCP<const Teuchos::Array<std::string> >
VanDerPolModel<Scalar>::get_p_names(int l) const
{
  if (!acceptModelParams_) {
    return Teuchos::null;
  }
  TEUCHOS_ASSERT_IN_RANGE_UPPER_EXCLUSIVE(l, 0, Np_);
  Teuchos::RCP<Teuchos::Array<std::string> > p_strings =
      Teuchos::rcp(new Teuchos::Array<std::string>());
  p_strings->push_back("Model Coefficient:  epsilon");
  return p_strings;
}
 
template <class Scalar>
Teuchos::RCP<const Thyra::VectorSpaceBase<Scalar> >
VanDerPolModel<Scalar>::get_g_space(int j) const
{
  TEUCHOS_ASSERT_IN_RANGE_UPPER_EXCLUSIVE(j, 0, Ng_);
  return g_space_;
}
 
// private
 
template <class Scalar>
void VanDerPolModel<Scalar>::setupInOutArgs_() const
{
  if (isInitialized_) {
    return;
  }
 
  {
    // Set up prototypical InArgs
    Thyra::ModelEvaluatorBase::InArgsSetup<Scalar> inArgs;
    inArgs.setModelEvalDescription(this->description());
    inArgs.setSupports(Thyra::ModelEvaluatorBase::IN_ARG_t);
    inArgs.setSupports(Thyra::ModelEvaluatorBase::IN_ARG_x);
    inArgs.setSupports(Thyra::ModelEvaluatorBase::IN_ARG_beta);
    inArgs.setSupports(Thyra::ModelEvaluatorBase::IN_ARG_x_dot);
    inArgs.setSupports(Thyra::ModelEvaluatorBase::IN_ARG_alpha);
    if (acceptModelParams_) {
      inArgs.set_Np(Np_);
    }
    inArgs_ = inArgs;
  }
 
  {
    // Set up prototypical OutArgs
    Thyra::ModelEvaluatorBase::OutArgsSetup<Scalar> outArgs;
    outArgs.setModelEvalDescription(this->description());
    outArgs.setSupports(Thyra::ModelEvaluatorBase::OUT_ARG_f);
    outArgs.setSupports(Thyra::ModelEvaluatorBase::OUT_ARG_W_op);
    if (acceptModelParams_) {
      outArgs.set_Np_Ng(Np_, Ng_);
      outArgs.setSupports(Thyra::ModelEvaluatorBase::OUT_ARG_DfDp, 0,
                          Thyra::ModelEvaluatorBase::DERIV_MV_JACOBIAN_FORM);
    }
    outArgs_ = outArgs;
  }
 
  // Set up nominal values
  nominalValues_ = inArgs_;
  if (haveIC_) {
    using Teuchos::RCP;
    nominalValues_.set_t(t0_ic_);
    const RCP<Thyra::VectorBase<Scalar> > x_ic = createMember(x_space_);
    {  // scope to delete DetachedVectorView
      Thyra::DetachedVectorView<Scalar> x_ic_view(*x_ic);
      x_ic_view[0] = x0_ic_;
      x_ic_view[1] = x1_ic_;
    }
    nominalValues_.set_x(x_ic);
    if (acceptModelParams_) {
      const RCP<Thyra::VectorBase<Scalar> > p_ic = createMember(p_space_);
      {
        Thyra::DetachedVectorView<Scalar> p_ic_view(*p_ic);
        p_ic_view[0] = epsilon_;
      }
      nominalValues_.set_p(0, p_ic);
    }
    const RCP<Thyra::VectorBase<Scalar> > x_dot_ic = createMember(x_space_);
    {  // scope to delete DetachedVectorView
      Thyra::DetachedVectorView<Scalar> x_dot_ic_view(*x_dot_ic);
      x_dot_ic_view[0] = x1_ic_;
      x_dot_ic_view[1] = ((1.0 - x0_ic_ * x0_ic_) * x1_ic_ - x0_ic_) / epsilon_;
    }
    nominalValues_.set_x_dot(x_dot_ic);
  }
 
  isInitialized_ = true;
}
 
template <class Scalar>
void VanDerPolModel<Scalar>::setParameterList(
    Teuchos::RCP<Teuchos::ParameterList> const &paramList)
{
  using Teuchos::get;
  using Teuchos::ParameterList;
  Teuchos::RCP<ParameterList> tmpPL =
      Teuchos::rcp(new ParameterList("VanDerPolModel"));
  if (paramList != Teuchos::null) tmpPL = paramList;
  tmpPL->validateParametersAndSetDefaults(*this->getValidParameters());
  this->setMyParamList(tmpPL);
  Teuchos::RCP<ParameterList> pl = this->getMyNonconstParamList();
  bool acceptModelParams         = get<bool>(*pl, "Accept model parameters");
  bool haveIC                    = get<bool>(*pl, "Provide nominal values");
  if ((acceptModelParams != acceptModelParams_) || (haveIC != haveIC_)) {
    isInitialized_ = false;
  }
  acceptModelParams_ = acceptModelParams;
  haveIC_            = haveIC;
  epsilon_           = get<Scalar>(*pl, "Coeff epsilon");
  x0_ic_             = get<Scalar>(*pl, "IC x0");
  x1_ic_             = get<Scalar>(*pl, "IC x1");
  t0_ic_             = get<Scalar>(*pl, "IC t0");
  setupInOutArgs_();
}
 
template <class Scalar>
Teuchos::RCP<const Teuchos::ParameterList>
VanDerPolModel<Scalar>::getValidParameters() const
{
  static Teuchos::RCP<const Teuchos::ParameterList> validPL;
  if (is_null(validPL)) {
    Teuchos::RCP<Teuchos::ParameterList> pl = Teuchos::parameterList();
    pl->set("Accept model parameters", false);
    pl->set("Provide nominal values", true);
    Teuchos::setDoubleParameter("Coeff epsilon", 1.0e-06,
                                "Coefficient a in model", &*pl);
    Teuchos::setDoubleParameter("IC x0", 2.0, "Initial Condition for x0", &*pl);
    Teuchos::setDoubleParameter("IC x1", 0.0, "Initial Condition for x1", &*pl);
    Teuchos::setDoubleParameter("IC t0", 0.0, "Initial time t0", &*pl);
    Teuchos::setIntParameter("Number of Time Step Sizes", 1,
                             "Number time step sizes for convergence study",
                             &*pl);
    validPL = pl;
  }
  return validPL;
}
 
}  // namespace Tempus_Test
#endif  // TEMPUS_TEST_VANDERPOL_MODEL_IMPL_HPP