Ifpack2_MDF_def.hpp

// @HEADER
// *****************************************************************************
//       Ifpack2: Templated Object-Oriented Algebraic Preconditioner Package
//
// Copyright 2009 NTESS and the Ifpack2 contributors.
// SPDX-License-Identifier: BSD-3-Clause
// *****************************************************************************
// @HEADER
 
#ifndef IFPACK2_MDF_DEF_HPP
#define IFPACK2_MDF_DEF_HPP
 
#include "Ifpack2_LocalFilter.hpp"
#include "Ifpack2_ScalingType.hpp"
#include "Tpetra_CrsMatrix.hpp"
#include "Teuchos_StandardParameterEntryValidators.hpp"
#include "Ifpack2_LocalSparseTriangularSolver.hpp"
#include "Ifpack2_Details_getParamTryingTypes.hpp"
#include "Kokkos_Core.hpp"
#include "Kokkos_Sort.hpp"
#include "KokkosSparse_mdf.hpp"
#include "KokkosKernels_Sorting.hpp"
#include <exception>
#include <type_traits>
 
namespace Ifpack2 {
 
namespace Details {
 
namespace MDFImpl {
 
template <class dev_view_t>
auto copy_view(const dev_view_t& vals) {
  using Kokkos::view_alloc;
  using Kokkos::WithoutInitializing;
  typename dev_view_t::non_const_type newvals(view_alloc(vals.label(), WithoutInitializing), vals.extent(0));
  Kokkos::deep_copy(newvals, vals);
  return newvals;
}
 
template <class array_t, class dev_view_t>
void copy_dev_view_to_host_array(array_t& array, const dev_view_t& dev_view) {
  using host_view_t = typename dev_view_t::host_mirror_type;
 
  // Clear out existing and allocate
  const auto ext = dev_view.extent(0);
 
  TEUCHOS_TEST_FOR_EXCEPTION(
      ext != size_t(array.size()), std::logic_error,
      "Ifpack2::MDF::copy_dev_view_to_host_array: "
      "Size of permuations on host and device do not match.  "
      "Please report this bug to the Ifpack2 developers.");
 
  // Wrap array data in view and copy
  Kokkos::deep_copy(host_view_t(array.get(), ext), dev_view);
}
 
template <class scalar_type, class local_ordinal_type, class global_ordinal_type, class node_type>
void applyReorderingPermutations(
    const Tpetra::MultiVector<scalar_type, local_ordinal_type, global_ordinal_type, node_type>& X,
    Tpetra::MultiVector<scalar_type, local_ordinal_type, global_ordinal_type, node_type>& Y,
    const Teuchos::ArrayRCP<local_ordinal_type>& perm) {
  TEUCHOS_TEST_FOR_EXCEPTION(X.getNumVectors() != Y.getNumVectors(), std::runtime_error,
                             "Ifpack2::MDF::applyReorderingPermuations ERROR: X.getNumVectors() != Y.getNumVectors().");
 
  Teuchos::ArrayRCP<Teuchos::ArrayRCP<const scalar_type>> x_ptr = X.get2dView();
  Teuchos::ArrayRCP<Teuchos::ArrayRCP<scalar_type>> y_ptr       = Y.get2dViewNonConst();
 
  for (size_t k = 0; k < X.getNumVectors(); k++)
    for (local_ordinal_type i = 0; (size_t)i < X.getLocalLength(); i++)
      y_ptr[k][perm[i]] = x_ptr[k][i];
}
 
template <class scalar_type, class local_ordinal_type, class global_ordinal_type, class node_type>
auto get_local_crs_row_matrix(
    Teuchos::RCP<const Tpetra::RowMatrix<scalar_type, local_ordinal_type, global_ordinal_type, node_type>> A_local) {
  using Teuchos::Array;
  using Teuchos::RCP;
  using Teuchos::rcp;
  using Teuchos::rcp_const_cast;
  using Teuchos::rcp_dynamic_cast;
 
  using crs_matrix_type = Tpetra::CrsMatrix<scalar_type, local_ordinal_type, global_ordinal_type, node_type>;
 
  using nonconst_local_inds_host_view_type = typename crs_matrix_type::nonconst_local_inds_host_view_type;
  using nonconst_values_host_view_type     = typename crs_matrix_type::nonconst_values_host_view_type;
 
  RCP<const crs_matrix_type> A_local_crs = rcp_dynamic_cast<const crs_matrix_type>(A_local);
  if (A_local_crs.is_null()) {
    local_ordinal_type numRows = A_local->getLocalNumRows();
    Array<size_t> entriesPerRow(numRows);
    for (local_ordinal_type i = 0; i < numRows; i++) {
      entriesPerRow[i] = A_local->getNumEntriesInLocalRow(i);
    }
    RCP<crs_matrix_type> A_local_crs_nc =
        rcp(new crs_matrix_type(A_local->getRowMap(),
                                A_local->getColMap(),
                                entriesPerRow()));
    // copy entries into A_local_crs
    nonconst_local_inds_host_view_type indices("indices", A_local->getLocalMaxNumRowEntries());
    nonconst_values_host_view_type values("values", A_local->getLocalMaxNumRowEntries());
    for (local_ordinal_type i = 0; i < numRows; i++) {
      size_t numEntries = 0;
      A_local->getLocalRowCopy(i, indices, values, numEntries);
      A_local_crs_nc->insertLocalValues(i, numEntries, reinterpret_cast<scalar_type*>(values.data()), indices.data());
    }
    A_local_crs_nc->fillComplete(A_local->getDomainMap(), A_local->getRangeMap());
    A_local_crs = rcp_const_cast<const crs_matrix_type>(A_local_crs_nc);
  }
 
  return A_local_crs;
}
 
}  // namespace MDFImpl
 
}  // namespace Details
 
template <class MatrixType>
MDF<MatrixType>::MDF(const Teuchos::RCP<const row_matrix_type>& Matrix_in)
  : A_(Matrix_in)
  , Verbosity_(0)
  , LevelOfFill_(0)
  , Overalloc_(2.)
  , isAllocated_(false)
  , isInitialized_(false)
  , isComputed_(false)
  , numInitialize_(0)
  , numCompute_(0)
  , numApply_(0)
  , initializeTime_(0.0)
  , computeTime_(0.0)
  , applyTime_(0.0) {
  allocateSolvers();
  allocatePermutations();
}
 
template <class MatrixType>
MDF<MatrixType>::MDF(const Teuchos::RCP<const crs_matrix_type>& Matrix_in)
  : A_(Matrix_in)
  , Verbosity_(0)
  , LevelOfFill_(0)
  , Overalloc_(2.)
  , isAllocated_(false)
  , isInitialized_(false)
  , isComputed_(false)
  , numInitialize_(0)
  , numCompute_(0)
  , numApply_(0)
  , initializeTime_(0.0)
  , computeTime_(0.0)
  , applyTime_(0.0) {
  allocateSolvers();
  allocatePermutations();
}
 
template <class MatrixType>
void MDF<MatrixType>::allocatePermutations(bool force) {
  if (A_.is_null()) return;
 
  // Allocate arrays as soon as size as known so their pointer is availabe
  if (force || permutations_.is_null() || A_->getLocalNumRows() != size_t(permutations_.size())) {
    permutations_        = Teuchos::null;
    reversePermutations_ = Teuchos::null;
    permutations_        = permutations_type(A_->getLocalNumRows());
    reversePermutations_ = permutations_type(A_->getLocalNumRows());
  }
}
 
template <class MatrixType>
void MDF<MatrixType>::allocateSolvers() {
  L_solver_ = Teuchos::null;
  U_solver_ = Teuchos::null;
  L_solver_ = Teuchos::rcp(new LocalSparseTriangularSolver<row_matrix_type>());
  L_solver_->setObjectLabel("lower");
  U_solver_ = Teuchos::rcp(new LocalSparseTriangularSolver<row_matrix_type>());
  U_solver_->setObjectLabel("upper");
}
 
template <class MatrixType>
void MDF<MatrixType>::setMatrix(const Teuchos::RCP<const row_matrix_type>& A) {
  // It's legal for A to be null; in that case, you may not call
  // initialize() until calling setMatrix() with a nonnull input.
  // Regardless, setting the matrix invalidates any previous
  // factorization.
  if (A.getRawPtr() != A_.getRawPtr()) {
    isAllocated_   = false;
    isInitialized_ = false;
    isComputed_    = false;
    A_local_       = Teuchos::null;
    MDF_handle_    = Teuchos::null;
 
    // The sparse triangular solvers get a triangular factor as their
    // input matrix.  The triangular factors L_ and U_ are getting
    // reset, so we reset the solvers' matrices to null.  Do that
    // before setting L_ and U_ to null, so that latter step actually
    // frees the factors.
    if (!L_solver_.is_null()) {
      L_solver_->setMatrix(Teuchos::null);
    }
    if (!U_solver_.is_null()) {
      U_solver_->setMatrix(Teuchos::null);
    }
 
    L_ = Teuchos::null;
    U_ = Teuchos::null;
    A_ = A;
 
    allocatePermutations(true);
  }
}
 
template <class MatrixType>
const typename MDF<MatrixType>::crs_matrix_type&
MDF<MatrixType>::getL() const {
  TEUCHOS_TEST_FOR_EXCEPTION(
      L_.is_null(), std::runtime_error,
      "Ifpack2::MDF::getL: The L factor "
      "is null.  Please call initialize() and compute() "
      "before calling this method.  If the input matrix has not yet been set, "
      "you must first call setMatrix() with a nonnull input matrix before you "
      "may call initialize() or compute().");
  return *L_;
}
 
template <class MatrixType>
typename MDF<MatrixType>::permutations_type&
MDF<MatrixType>::getPermutations() const {
  TEUCHOS_TEST_FOR_EXCEPTION(
      permutations_.is_null(), std::runtime_error,
      "Ifpack2::MDF::getPermutations: "
      "The permulations are null.  Please call initialize() and compute() "
      "before calling this method.  If the input matrix has not yet been set, "
      "you must first call setMatrix() with a nonnull input matrix before you "
      "may call initialize() or compute().");
  return const_cast<permutations_type&>(permutations_);
}
template <class MatrixType>
typename MDF<MatrixType>::permutations_type&
MDF<MatrixType>::getReversePermutations() const {
  TEUCHOS_TEST_FOR_EXCEPTION(
      reversePermutations_.is_null(), std::runtime_error,
      "Ifpack2::MDF::getReversePermutations: "
      "The permulations are null.  Please call initialize() and compute() "
      "before calling this method.  If the input matrix has not yet been set, "
      "you must first call setMatrix() with a nonnull input matrix before you "
      "may call initialize() or compute().");
  return const_cast<permutations_type&>(reversePermutations_);
}
 
template <class MatrixType>
const typename MDF<MatrixType>::crs_matrix_type&
MDF<MatrixType>::getU() const {
  TEUCHOS_TEST_FOR_EXCEPTION(
      U_.is_null(), std::runtime_error,
      "Ifpack2::MDF::getU: The U factor "
      "is null.  Please call initialize() and compute() "
      "before calling this method.  If the input matrix has not yet been set, "
      "you must first call setMatrix() with a nonnull input matrix before you "
      "may call initialize() or compute().");
  return *U_;
}
 
template <class MatrixType>
size_t MDF<MatrixType>::getNodeSmootherComplexity() const {
  TEUCHOS_TEST_FOR_EXCEPTION(
      A_.is_null(), std::runtime_error,
      "Ifpack2::MDF::getNodeSmootherComplexity: "
      "The input matrix A is null.  Please call setMatrix() with a nonnull "
      "input matrix, then call compute(), before calling this method.");
  // MDF methods cost roughly one apply + the nnz in the upper+lower triangles
  if (!L_.is_null() && !U_.is_null())
    return A_->getLocalNumEntries() + L_->getLocalNumEntries() + U_->getLocalNumEntries();
  else
    return 0;
}
 
template <class MatrixType>
Teuchos::RCP<const Tpetra::Map<typename MDF<MatrixType>::local_ordinal_type,
                               typename MDF<MatrixType>::global_ordinal_type,
                               typename MDF<MatrixType>::node_type>>
MDF<MatrixType>::getDomainMap() const {
  TEUCHOS_TEST_FOR_EXCEPTION(
      A_.is_null(), std::runtime_error,
      "Ifpack2::MDF::getDomainMap: "
      "The matrix is null.  Please call setMatrix() with a nonnull input "
      "before calling this method.");
 
  // FIXME (mfh 25 Jan 2014) Shouldn't this just come from A_?
  TEUCHOS_TEST_FOR_EXCEPTION(
      L_.is_null(), std::runtime_error,
      "Ifpack2::MDF::getDomainMap: "
      "The computed graph is null.  Please call initialize() and compute() before calling "
      "this method.");
  return L_->getDomainMap();
}
 
template <class MatrixType>
Teuchos::RCP<const Tpetra::Map<typename MDF<MatrixType>::local_ordinal_type,
                               typename MDF<MatrixType>::global_ordinal_type,
                               typename MDF<MatrixType>::node_type>>
MDF<MatrixType>::getRangeMap() const {
  TEUCHOS_TEST_FOR_EXCEPTION(
      A_.is_null(), std::runtime_error,
      "Ifpack2::MDF::getRangeMap: "
      "The matrix is null.  Please call setMatrix() with a nonnull input "
      "before calling this method.");
 
  // FIXME (mfh 25 Jan 2014) Shouldn't this just come from A_?
  TEUCHOS_TEST_FOR_EXCEPTION(
      L_.is_null(), std::runtime_error,
      "Ifpack2::MDF::getRangeMap: "
      "The computed graph is null.  Please call initialize() abd compute() before calling "
      "this method.");
  return L_->getRangeMap();
}
 
template <class MatrixType>
void MDF<MatrixType>::
    setParameters(const Teuchos::ParameterList& params) {
  using Details::getParamTryingTypes;
  using Teuchos::Array;
  using Teuchos::ParameterList;
  using Teuchos::RCP;
  const char prefix[] = "Ifpack2::MDF: ";
 
  // Default values of the various parameters.
  int fillLevel    = 0;
  double overalloc = 2.;
  int verbosity    = 0;
 
  // "fact: mdf level-of-fill" parsing is more complicated, because
  // we want to allow as many types as make sense.  int is the native
  // type, but we also want to accept double (for backwards
  // compatibilty with ILUT).  You can't cast arbitrary magnitude_type
  // (e.g., Sacado::MP::Vector) to int, so we use float instead, to
  // get coverage of the most common magnitude_type cases.  Weirdly,
  // there's an Ifpack2 test that sets the fill level as a
  // global_ordinal_type.
  {
    const std::string paramName("fact: mdf level-of-fill");
    getParamTryingTypes<int, int, global_ordinal_type, double, float>(fillLevel, params, paramName, prefix);
 
    TEUCHOS_TEST_FOR_EXCEPTION(fillLevel != 0, std::runtime_error, prefix << "MDF with level of fill != 0 is not yet implemented.");
  }
  {
    const std::string paramName("Verbosity");
    getParamTryingTypes<int, int, global_ordinal_type, double, float>(verbosity, params, paramName, prefix);
  }
  {
    const std::string paramName("fact: mdf overalloc");
    getParamTryingTypes<double, double>(overalloc, params, paramName, prefix);
  }
 
  // Forward to trisolvers.
  L_solver_->setParameters(params);
  U_solver_->setParameters(params);
 
  // "Commit" the values only after validating all of them.  This
  // ensures that there are no side effects if this routine throws an
  // exception.
 
  LevelOfFill_ = fillLevel;
  Overalloc_   = overalloc;
  Verbosity_   = verbosity;
}
 
template <class MatrixType>
Teuchos::RCP<const typename MDF<MatrixType>::row_matrix_type>
MDF<MatrixType>::getMatrix() const {
  return Teuchos::rcp_implicit_cast<const row_matrix_type>(A_);
}
 
template <class MatrixType>
Teuchos::RCP<const typename MDF<MatrixType>::crs_matrix_type>
MDF<MatrixType>::getCrsMatrix() const {
  return Teuchos::rcp_dynamic_cast<const crs_matrix_type>(A_, true);
}
 
template <class MatrixType>
Teuchos::RCP<const typename MDF<MatrixType>::row_matrix_type>
MDF<MatrixType>::makeLocalFilter(const Teuchos::RCP<const row_matrix_type>& A) {
  using Teuchos::RCP;
  using Teuchos::rcp;
  using Teuchos::rcp_dynamic_cast;
  using Teuchos::rcp_implicit_cast;
 
  // If A_'s communicator only has one process, or if its column and
  // row Maps are the same, then it is already local, so use it
  // directly.
  if (A->getRowMap()->getComm()->getSize() == 1 ||
      A->getRowMap()->isSameAs(*(A->getColMap()))) {
    return A;
  }
 
  // If A_ is already a LocalFilter, then use it directly.  This
  // should be the case if MDF is being used through
  // AdditiveSchwarz, for example.
  RCP<const LocalFilter<row_matrix_type>> A_lf_r =
      rcp_dynamic_cast<const LocalFilter<row_matrix_type>>(A);
  if (!A_lf_r.is_null()) {
    return rcp_implicit_cast<const row_matrix_type>(A_lf_r);
  } else {
    // A_'s communicator has more than one process, its row Map and
    // its column Map differ, and A_ is not a LocalFilter.  Thus, we
    // have to wrap it in a LocalFilter.
    return rcp(new LocalFilter<row_matrix_type>(A));
  }
}
 
template <class MatrixType>
void MDF<MatrixType>::initialize() {
  using Teuchos::Array;
  using Teuchos::ArrayView;
  using Teuchos::RCP;
  using Teuchos::rcp;
  using Teuchos::rcp_const_cast;
  using Teuchos::rcp_dynamic_cast;
  using Teuchos::rcp_implicit_cast;
  const char prefix[] = "Ifpack2::MDF::initialize: ";
 
  TEUCHOS_TEST_FOR_EXCEPTION(A_.is_null(), std::runtime_error, prefix << "The matrix is null.  Please "
                                                                         "call setMatrix() with a nonnull input before calling this method.");
  TEUCHOS_TEST_FOR_EXCEPTION(!A_->isFillComplete(), std::runtime_error, prefix << "The matrix is not "
                                                                                  "fill complete.  You may not invoke initialize() or compute() with this "
                                                                                  "matrix until the matrix is fill complete.  If your matrix is a "
                                                                                  "Tpetra::CrsMatrix, please call fillComplete on it (with the domain and "
                                                                                  "range Maps, if appropriate) before calling this method.");
 
  Teuchos::Time timer("MDF::initialize");
  double startTime = timer.wallTime();
  {  // Start timing
    Teuchos::TimeMonitor timeMon(timer);
 
    // Calling initialize() means that the user asserts that the graph
    // of the sparse matrix may have changed.  We must not just reuse
    // the previous graph in that case.
    //
    // Regarding setting isAllocated_ to false: Eventually, we may want
    // some kind of clever memory reuse strategy, but it's always
    // correct just to blow everything away and start over.
    isInitialized_ = false;
    isAllocated_   = false;
    isComputed_    = false;
    MDF_handle_    = Teuchos::null;
 
    A_local_ = makeLocalFilter(A_);
    TEUCHOS_TEST_FOR_EXCEPTION(
        A_local_.is_null(), std::logic_error,
        "Ifpack2::MDF::initialize: "
        "makeLocalFilter returned null; it failed to compute A_local.  "
        "Please report this bug to the Ifpack2 developers.");
 
    // FIXME (mfh 24 Jan 2014, 26 Mar 2014) It would be more efficient
    // to rewrite MDF so that it works with any RowMatrix input, not
    // just CrsMatrix.  (That would require rewriting mdfGraph to
    // handle a Tpetra::RowGraph.)  However, to make it work for now,
    // we just copy the input matrix if it's not a CrsMatrix.
    {
      RCP<const crs_matrix_type> A_local_crs = Details::MDFImpl::get_local_crs_row_matrix(A_local_);
 
      auto A_local_device = A_local_crs->getLocalMatrixDevice();
      MDF_handle_         = rcp(new MDF_handle_device_type(A_local_device));
      MDF_handle_->set_verbosity(Verbosity_);
 
      KokkosSparse::Experimental::mdf_symbolic(A_local_device, *MDF_handle_);
 
      isAllocated_ = true;
    }
 
    checkOrderingConsistency(*A_local_);
  }  // Stop timing
 
  isInitialized_ = true;
  ++numInitialize_;
  initializeTime_ += (timer.wallTime() - startTime);
}
 
template <class MatrixType>
void MDF<MatrixType>::
    checkOrderingConsistency(const row_matrix_type& A) {
  // First check that the local row map ordering is the same as the local portion of the column map.
  // The extraction of the strictly lower/upper parts of A, as well as the factorization,
  // implicitly assume that this is the case.
  Teuchos::ArrayView<const global_ordinal_type> rowGIDs = A.getRowMap()->getLocalElementList();
  Teuchos::ArrayView<const global_ordinal_type> colGIDs = A.getColMap()->getLocalElementList();
  bool gidsAreConsistentlyOrdered                       = true;
  global_ordinal_type indexOfInconsistentGID            = 0;
  for (global_ordinal_type i = 0; i < rowGIDs.size(); ++i) {
    if (rowGIDs[i] != colGIDs[i]) {
      gidsAreConsistentlyOrdered = false;
      indexOfInconsistentGID     = i;
      break;
    }
  }
  TEUCHOS_TEST_FOR_EXCEPTION(gidsAreConsistentlyOrdered == false, std::runtime_error,
                             "The ordering of the local GIDs in the row and column maps is not the same"
                                 << std::endl
                                 << "at index " << indexOfInconsistentGID
                                 << ".  Consistency is required, as all calculations are done with"
                                 << std::endl
                                 << "local indexing.");
}
 
template <class MatrixType>
void MDF<MatrixType>::compute() {
  using Teuchos::Array;
  using Teuchos::ArrayView;
  using Teuchos::RCP;
  using Teuchos::rcp;
  using Teuchos::rcp_const_cast;
  using Teuchos::rcp_dynamic_cast;
  const char prefix[] = "Ifpack2::MDF::compute: ";
 
  // initialize() checks this too, but it's easier for users if the
  // error shows them the name of the method that they actually
  // called, rather than the name of some internally called method.
  TEUCHOS_TEST_FOR_EXCEPTION(A_.is_null(), std::runtime_error, prefix << "The matrix is null.  Please "
                                                                         "call setMatrix() with a nonnull input before calling this method.");
  TEUCHOS_TEST_FOR_EXCEPTION(!A_->isFillComplete(), std::runtime_error, prefix << "The matrix is not "
                                                                                  "fill complete.  You may not invoke initialize() or compute() with this "
                                                                                  "matrix until the matrix is fill complete.  If your matrix is a "
                                                                                  "Tpetra::CrsMatrix, please call fillComplete on it (with the domain and "
                                                                                  "range Maps, if appropriate) before calling this method.");
 
  if (!isInitialized()) {
    initialize();  // Don't count this in the compute() time
  }
 
  Teuchos::Time timer("MDF::compute");
 
  // Start timing
  Teuchos::TimeMonitor timeMon(timer);
  double startTime = timer.wallTime();
 
  isComputed_ = false;
 
  {  // Make sure values in A is picked up even in case of pattern reuse
    RCP<const crs_matrix_type> A_local_crs = Details::MDFImpl::get_local_crs_row_matrix(A_local_);
 
    // Compute the ordering and factorize
    auto A_local_device = A_local_crs->getLocalMatrixDevice();
 
    KokkosSparse::Experimental::mdf_numeric(A_local_device, *MDF_handle_);
  }
 
  // Ordering convention for MDF impl and here are reversed. Do reverse here to avoid confusion
  Details::MDFImpl::copy_dev_view_to_host_array(reversePermutations_, MDF_handle_->permutation);
  Details::MDFImpl::copy_dev_view_to_host_array(permutations_, MDF_handle_->permutation_inv);
 
  // TMR: Need to COPY the values held by the MDF handle because the CRS matrix needs to
  // exclusively own them and the MDF_handles use_count contribution throws that off
  {
    auto L_mdf = MDF_handle_->getL();
    L_         = rcp(new crs_matrix_type(
                A_local_->getRowMap(),
                A_local_->getColMap(),
                Details::MDFImpl::copy_view(L_mdf.graph.row_map),
                Details::MDFImpl::copy_view(L_mdf.graph.entries),
                Details::MDFImpl::copy_view(L_mdf.values)));
  }
  {
    auto U_mdf = MDF_handle_->getU();
    U_         = rcp(new crs_matrix_type(
                A_local_->getRowMap(),
                A_local_->getColMap(),
                Details::MDFImpl::copy_view(U_mdf.graph.row_map),
                Details::MDFImpl::copy_view(U_mdf.graph.entries),
                Details::MDFImpl::copy_view(U_mdf.values)));
  }
  L_->fillComplete();
  U_->fillComplete();
  L_solver_->setMatrix(L_);
  L_solver_->initialize();
  L_solver_->compute();
  U_solver_->setMatrix(U_);
  U_solver_->initialize();
  U_solver_->compute();
 
  isComputed_ = true;
  ++numCompute_;
  computeTime_ += (timer.wallTime() - startTime);
}
 
template <class MatrixType>
void MDF<MatrixType>::
    apply_impl(const Tpetra::MultiVector<scalar_type, local_ordinal_type, global_ordinal_type, node_type>& X,
               Tpetra::MultiVector<scalar_type, local_ordinal_type, global_ordinal_type, node_type>& Y,
               Teuchos::ETransp mode,
               scalar_type alpha,
               scalar_type beta) const {
  const scalar_type one  = STS::one();
  const scalar_type zero = STS::zero();
 
  if (alpha == one && beta == zero) {
    MV tmp(Y.getMap(), Y.getNumVectors());
    Details::MDFImpl::applyReorderingPermutations(X, tmp, permutations_);
    if (mode == Teuchos::NO_TRANS) {  // Solve L (D (U Y)) = X for Y.
      // Start by solving L Y = X for Y.
      L_solver_->apply(tmp, Y, mode);
      U_solver_->apply(Y, tmp, mode);  // Solve U Y = Y.
    } else {                           // Solve U^P (D^P (L^P Y)) = X for Y (where P is * or T).
      // Start by solving U^P Y = X for Y.
      U_solver_->apply(tmp, Y, mode);
      L_solver_->apply(Y, tmp, mode);  // Solve L^P Y = Y.
    }
    Details::MDFImpl::applyReorderingPermutations(tmp, Y, reversePermutations_);
  } else {  // alpha != 1 or beta != 0
    if (alpha == zero) {
      // The special case for beta == 0 ensures that if Y contains Inf
      // or NaN values, we replace them with 0 (following BLAS
      // convention), rather than multiplying them by 0 to get NaN.
      if (beta == zero) {
        Y.putScalar(zero);
      } else {
        Y.scale(beta);
      }
    } else {  // alpha != zero
      MV Y_tmp(Y.getMap(), Y.getNumVectors());
      apply_impl(X, Y_tmp, mode);
      Y.update(alpha, Y_tmp, beta);
    }
  }
}
 
template <class MatrixType>
void MDF<MatrixType>::
    apply(const Tpetra::MultiVector<scalar_type, local_ordinal_type, global_ordinal_type, node_type>& X,
          Tpetra::MultiVector<scalar_type, local_ordinal_type, global_ordinal_type, node_type>& Y,
          Teuchos::ETransp mode,
          scalar_type alpha,
          scalar_type beta) const {
  using Teuchos::RCP;
  using Teuchos::rcpFromRef;
 
  TEUCHOS_TEST_FOR_EXCEPTION(
      A_.is_null(), std::runtime_error,
      "Ifpack2::MDF::apply: The matrix is "
      "null.  Please call setMatrix() with a nonnull input, then initialize() "
      "and compute(), before calling this method.");
  TEUCHOS_TEST_FOR_EXCEPTION(
      !isComputed(), std::runtime_error,
      "Ifpack2::MDF::apply: If you have not yet called compute(), "
      "you must call compute() before calling this method.");
  TEUCHOS_TEST_FOR_EXCEPTION(
      X.getNumVectors() != Y.getNumVectors(), std::invalid_argument,
      "Ifpack2::MDF::apply: X and Y do not have the same number of columns.  "
      "X.getNumVectors() = "
          << X.getNumVectors()
          << " != Y.getNumVectors() = " << Y.getNumVectors() << ".");
  TEUCHOS_TEST_FOR_EXCEPTION(
      STS::isComplex && mode == Teuchos::CONJ_TRANS, std::logic_error,
      "Ifpack2::MDF::apply: mode = Teuchos::CONJ_TRANS is not implemented for "
      "complex Scalar type.  Please talk to the Ifpack2 developers to get this "
      "fixed.  There is a FIXME in this file about this very issue.");
#ifdef HAVE_IFPACK2_DEBUG
  {
    Teuchos::Array<magnitude_type> norms(X.getNumVectors());
    X.norm1(norms());
    bool good = true;
    for (size_t j = 0; j < X.getNumVectors(); ++j) {
      if (STM::isnaninf(norms[j])) {
        good = false;
        break;
      }
    }
    TEUCHOS_TEST_FOR_EXCEPTION(!good, std::runtime_error, "Ifpack2::MDF::apply: The 1-norm of the input X is NaN or Inf.");
  }
#endif  // HAVE_IFPACK2_DEBUG
 
  Teuchos::Time timer("MDF::apply");
  double startTime = timer.wallTime();
  {  // Start timing
    Teuchos::TimeMonitor timeMon(timer);
    apply_impl(X, Y, mode, alpha, beta);
  }  // end timing
 
#ifdef HAVE_IFPACK2_DEBUG
  {
    Teuchos::Array<magnitude_type> norms(Y.getNumVectors());
    Y.norm1(norms());
    bool good = true;
    for (size_t j = 0; j < Y.getNumVectors(); ++j) {
      if (STM::isnaninf(norms[j])) {
        good = false;
        break;
      }
    }
    TEUCHOS_TEST_FOR_EXCEPTION(!good, std::runtime_error, "Ifpack2::MDF::apply: The 1-norm of the output Y is NaN or Inf.");
  }
#endif  // HAVE_IFPACK2_DEBUG
 
  ++numApply_;
  applyTime_ += (timer.wallTime() - startTime);
}
 
template <class MatrixType>
std::string MDF<MatrixType>::description() const {
  std::ostringstream os;
 
  // Output is a valid YAML dictionary in flow style.  If you don't
  // like everything on a single line, you should call describe()
  // instead.
  os << "\"Ifpack2::MDF\": {";
  os << "Initialized: " << (isInitialized() ? "true" : "false") << ", "
     << "Computed: " << (isComputed() ? "true" : "false") << ", ";
 
  os << "Level-of-fill: " << getLevelOfFill() << ", ";
 
  if (A_.is_null()) {
    os << "Matrix: null";
  } else {
    os << "Global matrix dimensions: ["
       << A_->getGlobalNumRows() << ", " << A_->getGlobalNumCols() << "]"
       << ", Global nnz: " << A_->getGlobalNumEntries();
  }
 
  if (!L_solver_.is_null()) os << ", " << L_solver_->description();
  if (!U_solver_.is_null()) os << ", " << U_solver_->description();
 
  os << "}";
  return os.str();
}
 
}  // namespace Ifpack2
 
#define IFPACK2_MDF_INSTANT(S, LO, GO, N) \
  template class Ifpack2::MDF<Tpetra::RowMatrix<S, LO, GO, N>>;
 
#endif /* IFPACK2_MDF_DEF_HPP */